Gene : Cagra.1393s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  2
Name:  ? Cagra.1393s0002 Secondary Identifier:  ? PAC:28897732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1393s0002 0.5kb upstream 0.5kb upstream 1986 true Scaffold1393: 4636-6621 Capsella grandiflora
Cagra.1393s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold1393: 6122-6621 Capsella grandiflora
Cagra.1393s0002 0.5kb downstream 0.5kb downstream 1986 true Scaffold1393: 4136-6121 Capsella grandiflora
Cagra.1393s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold1393: 4136-4635 Capsella grandiflora
Cagra.1393s0002 1.0kb upstream 1.0kb upstream 2486 true Scaffold1393: 4636-7121 Capsella grandiflora
Cagra.1393s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold1393: 6122-7121 Capsella grandiflora
Cagra.1393s0002 1.0kb downstream 1.0kb downstream 2486 true Scaffold1393: 3636-6121 Capsella grandiflora
Cagra.1393s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold1393: 3636-4635 Capsella grandiflora
Cagra.1393s0002 2.0kb upstream 2.0kb upstream 3486 true Scaffold1393: 4636-8121 Capsella grandiflora
Cagra.1393s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold1393: 6122-8121 Capsella grandiflora
Cagra.1393s0002 2.0kb downstream 2.0kb downstream 3486 true Scaffold1393: 2636-6121 Capsella grandiflora
Cagra.1393s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold1393: 2636-4635 Capsella grandiflora
Cagra.1393s0002 5.0kb upstream 5.0kb upstream 6486 true Scaffold1393: 4636-11121 Capsella grandiflora
Cagra.1393s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold1393: 6122-11121 Capsella grandiflora
Cagra.1393s0002 5.0kb downstream 5.0kb downstream 6121 true Scaffold1393: 1-6121 Capsella grandiflora
Cagra.1393s0002 5.0kb downstream 5.0kb downstream 4635 false Scaffold1393: 1-4635 Capsella grandiflora
Cagra.1393s0002 10.0kb upstream 10.0kb upstream 11486 true Scaffold1393: 4636-16121 Capsella grandiflora
Cagra.1393s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold1393: 6122-16121 Capsella grandiflora
Cagra.1393s0002 10.0kb downstream 10.0kb downstream 6121 true Scaffold1393: 1-6121 Capsella grandiflora
Cagra.1393s0002 10.0kb downstream 10.0kb downstream 4635 false Scaffold1393: 1-4635 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361949 5261 Brassicaceae View MSA
123831862 5264 Brassicales-Malvales View MSA
124344004 5266 SBM View MSA
124237545 5268 Malvidae View MSA
124050829 5270 Rosid View MSA
123749996 5271 Pentapetalae View MSA
122791674 5272 Eudicot View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain