Gene : Cagra.1383s0040 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10336:SF105 - PHOSPHOINOSITIDE PHOSPHOLIPASE C 1-RELATED Genomic Order:  40
Name:  ? Cagra.1383s0040 Secondary Identifier:  ? PAC:28901775
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPASYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6351 Capsella grandiflora pathologic  
Cgrandiflora PWY-6367 Capsella grandiflora pathologic  
Cgrandiflora PWY-7039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1383s0040 0.5kb upstream 0.5kb upstream 2556 true Scaffold1383: 131903-134458 Capsella grandiflora
Cagra.1383s0040 0.5kb upstream 0.5kb upstream 500 false Scaffold1383: 131903-132402 Capsella grandiflora
Cagra.1383s0040 0.5kb downstream 0.5kb downstream 2556 true Scaffold1383: 132403-134958 Capsella grandiflora
Cagra.1383s0040 0.5kb downstream 0.5kb downstream 500 false Scaffold1383: 134459-134958 Capsella grandiflora
Cagra.1383s0040 1.0kb upstream 1.0kb upstream 3056 true Scaffold1383: 131403-134458 Capsella grandiflora
Cagra.1383s0040 1.0kb upstream 1.0kb upstream 1000 false Scaffold1383: 131403-132402 Capsella grandiflora
Cagra.1383s0040 1.0kb downstream 1.0kb downstream 3056 true Scaffold1383: 132403-135458 Capsella grandiflora
Cagra.1383s0040 1.0kb downstream 1.0kb downstream 1000 false Scaffold1383: 134459-135458 Capsella grandiflora
Cagra.1383s0040 2.0kb upstream 2.0kb upstream 4056 true Scaffold1383: 130403-134458 Capsella grandiflora
Cagra.1383s0040 2.0kb upstream 2.0kb upstream 2000 false Scaffold1383: 130403-132402 Capsella grandiflora
Cagra.1383s0040 2.0kb downstream 2.0kb downstream 4056 true Scaffold1383: 132403-136458 Capsella grandiflora
Cagra.1383s0040 2.0kb downstream 2.0kb downstream 2000 false Scaffold1383: 134459-136458 Capsella grandiflora
Cagra.1383s0040 5.0kb upstream 5.0kb upstream 7056 true Scaffold1383: 127403-134458 Capsella grandiflora
Cagra.1383s0040 5.0kb upstream 5.0kb upstream 5000 false Scaffold1383: 127403-132402 Capsella grandiflora
Cagra.1383s0040 5.0kb downstream 5.0kb downstream 7056 true Scaffold1383: 132403-139458 Capsella grandiflora
Cagra.1383s0040 5.0kb downstream 5.0kb downstream 5000 false Scaffold1383: 134459-139458 Capsella grandiflora
Cagra.1383s0040 10.0kb upstream 10.0kb upstream 12056 true Scaffold1383: 122403-134458 Capsella grandiflora
Cagra.1383s0040 10.0kb upstream 10.0kb upstream 10000 false Scaffold1383: 122403-132402 Capsella grandiflora
Cagra.1383s0040 10.0kb downstream 10.0kb downstream 12056 true Scaffold1383: 132403-144458 Capsella grandiflora
Cagra.1383s0040 10.0kb downstream 10.0kb downstream 10000 false Scaffold1383: 134459-144458 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361806 5261 Brassicaceae View MSA
123798250 5264 Brassicales-Malvales View MSA
124295917 5266 SBM View MSA
124148223 5268 Malvidae View MSA
123874264 5270 Rosid View MSA
123458265 5271 Pentapetalae View MSA
122796639 5272 Eudicot View MSA
122046719 5273 Angiosperm View MSA
121351735 5274 Embryophyte View MSA
123428200 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain