Gene : Cagra.1361s0051 C. grandiflora v1.1
Defline:  (1 of 1) PTHR34369:SF2 - PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC Genomic Order:  51
Name:  ? Cagra.1361s0051 Secondary Identifier:  ? PAC:28915525
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1361s0051 0.5kb upstream 0.5kb upstream 1402 true Scaffold1361: 184047-185448 Capsella grandiflora
Cagra.1361s0051 0.5kb upstream 0.5kb upstream 500 false Scaffold1361: 184047-184546 Capsella grandiflora
Cagra.1361s0051 0.5kb downstream 0.5kb downstream 1402 true Scaffold1361: 184547-185948 Capsella grandiflora
Cagra.1361s0051 0.5kb downstream 0.5kb downstream 500 false Scaffold1361: 185449-185948 Capsella grandiflora
Cagra.1361s0051 1.0kb upstream 1.0kb upstream 1902 true Scaffold1361: 183547-185448 Capsella grandiflora
Cagra.1361s0051 1.0kb upstream 1.0kb upstream 1000 false Scaffold1361: 183547-184546 Capsella grandiflora
Cagra.1361s0051 1.0kb downstream 1.0kb downstream 1902 true Scaffold1361: 184547-186448 Capsella grandiflora
Cagra.1361s0051 1.0kb downstream 1.0kb downstream 1000 false Scaffold1361: 185449-186448 Capsella grandiflora
Cagra.1361s0051 2.0kb upstream 2.0kb upstream 2902 true Scaffold1361: 182547-185448 Capsella grandiflora
Cagra.1361s0051 2.0kb upstream 2.0kb upstream 2000 false Scaffold1361: 182547-184546 Capsella grandiflora
Cagra.1361s0051 2.0kb downstream 2.0kb downstream 2902 true Scaffold1361: 184547-187448 Capsella grandiflora
Cagra.1361s0051 2.0kb downstream 2.0kb downstream 2000 false Scaffold1361: 185449-187448 Capsella grandiflora
Cagra.1361s0051 5.0kb upstream 5.0kb upstream 5902 true Scaffold1361: 179547-185448 Capsella grandiflora
Cagra.1361s0051 5.0kb upstream 5.0kb upstream 5000 false Scaffold1361: 179547-184546 Capsella grandiflora
Cagra.1361s0051 5.0kb downstream 5.0kb downstream 5902 true Scaffold1361: 184547-190448 Capsella grandiflora
Cagra.1361s0051 5.0kb downstream 5.0kb downstream 5000 false Scaffold1361: 185449-190448 Capsella grandiflora
Cagra.1361s0051 10.0kb upstream 10.0kb upstream 10902 true Scaffold1361: 174547-185448 Capsella grandiflora
Cagra.1361s0051 10.0kb upstream 10.0kb upstream 10000 false Scaffold1361: 174547-184546 Capsella grandiflora
Cagra.1361s0051 10.0kb downstream 10.0kb downstream 10902 true Scaffold1361: 184547-195448 Capsella grandiflora
Cagra.1361s0051 10.0kb downstream 10.0kb downstream 10000 false Scaffold1361: 185449-195448 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379999 5261 Brassicaceae View MSA
123831359 5264 Brassicales-Malvales View MSA
124350307 5266 SBM View MSA
124247067 5268 Malvidae View MSA
124063437 5270 Rosid View MSA
123736551 5271 Pentapetalae View MSA
122791395 5272 Eudicot View MSA
122042523 5273 Angiosperm View MSA
121350947 5274 Embryophyte View MSA
123427183 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain