Gene : Cagra.1632s0032 C. grandiflora v1.1
Defline:  (1 of 3) 1.2.4.4 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) / Dehydrogenase, branched chain alpha-keto acid Genomic Order:  32
Name:  ? Cagra.1632s0032 Secondary Identifier:  ? PAC:28919427
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5046 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1632s0032 0.5kb upstream 0.5kb upstream 3465 true Scaffold1632: 130846-134310 Capsella grandiflora
Cagra.1632s0032 0.5kb upstream 0.5kb upstream 500 false Scaffold1632: 130846-131345 Capsella grandiflora
Cagra.1632s0032 0.5kb downstream 0.5kb downstream 3465 true Scaffold1632: 131346-134810 Capsella grandiflora
Cagra.1632s0032 0.5kb downstream 0.5kb downstream 500 false Scaffold1632: 134311-134810 Capsella grandiflora
Cagra.1632s0032 1.0kb upstream 1.0kb upstream 3965 true Scaffold1632: 130346-134310 Capsella grandiflora
Cagra.1632s0032 1.0kb upstream 1.0kb upstream 1000 false Scaffold1632: 130346-131345 Capsella grandiflora
Cagra.1632s0032 1.0kb downstream 1.0kb downstream 3965 true Scaffold1632: 131346-135310 Capsella grandiflora
Cagra.1632s0032 1.0kb downstream 1.0kb downstream 1000 false Scaffold1632: 134311-135310 Capsella grandiflora
Cagra.1632s0032 2.0kb upstream 2.0kb upstream 4965 true Scaffold1632: 129346-134310 Capsella grandiflora
Cagra.1632s0032 2.0kb upstream 2.0kb upstream 2000 false Scaffold1632: 129346-131345 Capsella grandiflora
Cagra.1632s0032 2.0kb downstream 2.0kb downstream 4965 true Scaffold1632: 131346-136310 Capsella grandiflora
Cagra.1632s0032 2.0kb downstream 2.0kb downstream 2000 false Scaffold1632: 134311-136310 Capsella grandiflora
Cagra.1632s0032 5.0kb upstream 5.0kb upstream 7965 true Scaffold1632: 126346-134310 Capsella grandiflora
Cagra.1632s0032 5.0kb upstream 5.0kb upstream 5000 false Scaffold1632: 126346-131345 Capsella grandiflora
Cagra.1632s0032 5.0kb downstream 5.0kb downstream 7965 true Scaffold1632: 131346-139310 Capsella grandiflora
Cagra.1632s0032 5.0kb downstream 5.0kb downstream 5000 false Scaffold1632: 134311-139310 Capsella grandiflora
Cagra.1632s0032 10.0kb upstream 10.0kb upstream 12965 true Scaffold1632: 121346-134310 Capsella grandiflora
Cagra.1632s0032 10.0kb upstream 10.0kb upstream 10000 false Scaffold1632: 121346-131345 Capsella grandiflora
Cagra.1632s0032 10.0kb downstream 10.0kb downstream 12965 true Scaffold1632: 131346-144310 Capsella grandiflora
Cagra.1632s0032 10.0kb downstream 10.0kb downstream 10000 false Scaffold1632: 134311-144310 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377984 5261 Brassicaceae View MSA
123832958 5264 Brassicales-Malvales View MSA
124348231 5266 SBM View MSA
124244585 5268 Malvidae View MSA
124064753 5270 Rosid View MSA
123750640 5271 Pentapetalae View MSA
122791863 5272 Eudicot View MSA
122044172 5273 Angiosperm View MSA
121346270 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain