Gene : Cagra.1582s0014 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31707:SF55 - PECTINESTERASE 2-RELATED Genomic Order:  14
Name:  ? Cagra.1582s0014 Secondary Identifier:  ? PAC:28904825
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1582s0014 0.5kb upstream 0.5kb upstream 3505 true Scaffold1582: 57409-60913 Capsella grandiflora
Cagra.1582s0014 0.5kb upstream 0.5kb upstream 500 false Scaffold1582: 60414-60913 Capsella grandiflora
Cagra.1582s0014 0.5kb downstream 0.5kb downstream 3505 true Scaffold1582: 56909-60413 Capsella grandiflora
Cagra.1582s0014 0.5kb downstream 0.5kb downstream 500 false Scaffold1582: 56909-57408 Capsella grandiflora
Cagra.1582s0014 1.0kb upstream 1.0kb upstream 4005 true Scaffold1582: 57409-61413 Capsella grandiflora
Cagra.1582s0014 1.0kb upstream 1.0kb upstream 1000 false Scaffold1582: 60414-61413 Capsella grandiflora
Cagra.1582s0014 1.0kb downstream 1.0kb downstream 4005 true Scaffold1582: 56409-60413 Capsella grandiflora
Cagra.1582s0014 1.0kb downstream 1.0kb downstream 1000 false Scaffold1582: 56409-57408 Capsella grandiflora
Cagra.1582s0014 2.0kb upstream 2.0kb upstream 5005 true Scaffold1582: 57409-62413 Capsella grandiflora
Cagra.1582s0014 2.0kb upstream 2.0kb upstream 2000 false Scaffold1582: 60414-62413 Capsella grandiflora
Cagra.1582s0014 2.0kb downstream 2.0kb downstream 5005 true Scaffold1582: 55409-60413 Capsella grandiflora
Cagra.1582s0014 2.0kb downstream 2.0kb downstream 2000 false Scaffold1582: 55409-57408 Capsella grandiflora
Cagra.1582s0014 5.0kb upstream 5.0kb upstream 8005 true Scaffold1582: 57409-65413 Capsella grandiflora
Cagra.1582s0014 5.0kb upstream 5.0kb upstream 5000 false Scaffold1582: 60414-65413 Capsella grandiflora
Cagra.1582s0014 5.0kb downstream 5.0kb downstream 8005 true Scaffold1582: 52409-60413 Capsella grandiflora
Cagra.1582s0014 5.0kb downstream 5.0kb downstream 5000 false Scaffold1582: 52409-57408 Capsella grandiflora
Cagra.1582s0014 10.0kb upstream 10.0kb upstream 13005 true Scaffold1582: 57409-70413 Capsella grandiflora
Cagra.1582s0014 10.0kb upstream 10.0kb upstream 10000 false Scaffold1582: 60414-70413 Capsella grandiflora
Cagra.1582s0014 10.0kb downstream 10.0kb downstream 13005 true Scaffold1582: 47409-60413 Capsella grandiflora
Cagra.1582s0014 10.0kb downstream 10.0kb downstream 10000 false Scaffold1582: 47409-57408 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367775 5261 Brassicaceae View MSA
123841223 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain