Gene : Cagra.1569s0011 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  11
Name:  ? Cagra.1569s0011 Secondary Identifier:  ? PAC:28913433
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CAROTENOID-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5175 Capsella grandiflora pathologic  
Cgrandiflora PWY-5946 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1569s0011 0.5kb upstream 0.5kb upstream 3587 true Scaffold1569: 53725-57311 Capsella grandiflora
Cagra.1569s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold1569: 53725-54224 Capsella grandiflora
Cagra.1569s0011 0.5kb downstream 0.5kb downstream 3587 true Scaffold1569: 54225-57811 Capsella grandiflora
Cagra.1569s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold1569: 57312-57811 Capsella grandiflora
Cagra.1569s0011 1.0kb upstream 1.0kb upstream 4087 true Scaffold1569: 53225-57311 Capsella grandiflora
Cagra.1569s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold1569: 53225-54224 Capsella grandiflora
Cagra.1569s0011 1.0kb downstream 1.0kb downstream 4087 true Scaffold1569: 54225-58311 Capsella grandiflora
Cagra.1569s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold1569: 57312-58311 Capsella grandiflora
Cagra.1569s0011 2.0kb upstream 2.0kb upstream 5087 true Scaffold1569: 52225-57311 Capsella grandiflora
Cagra.1569s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold1569: 52225-54224 Capsella grandiflora
Cagra.1569s0011 2.0kb downstream 2.0kb downstream 5087 true Scaffold1569: 54225-59311 Capsella grandiflora
Cagra.1569s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold1569: 57312-59311 Capsella grandiflora
Cagra.1569s0011 5.0kb upstream 5.0kb upstream 8087 true Scaffold1569: 49225-57311 Capsella grandiflora
Cagra.1569s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold1569: 49225-54224 Capsella grandiflora
Cagra.1569s0011 5.0kb downstream 5.0kb downstream 8087 true Scaffold1569: 54225-62311 Capsella grandiflora
Cagra.1569s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold1569: 57312-62311 Capsella grandiflora
Cagra.1569s0011 10.0kb upstream 10.0kb upstream 13087 true Scaffold1569: 44225-57311 Capsella grandiflora
Cagra.1569s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold1569: 44225-54224 Capsella grandiflora
Cagra.1569s0011 10.0kb downstream 10.0kb downstream 13087 true Scaffold1569: 54225-67311 Capsella grandiflora
Cagra.1569s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold1569: 57312-67311 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain