Gene : Cagra.1508s0168 C. grandiflora v1.1
Defline:  (1 of 1) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  168
Name:  ? Cagra.1508s0168 Secondary Identifier:  ? PAC:28905808
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1508s0168 0.5kb upstream 0.5kb upstream 1377 true Scaffold1508: 722288-723664 Capsella grandiflora
Cagra.1508s0168 0.5kb upstream 0.5kb upstream 500 false Scaffold1508: 723165-723664 Capsella grandiflora
Cagra.1508s0168 0.5kb downstream 0.5kb downstream 1377 true Scaffold1508: 721788-723164 Capsella grandiflora
Cagra.1508s0168 0.5kb downstream 0.5kb downstream 500 false Scaffold1508: 721788-722287 Capsella grandiflora
Cagra.1508s0168 1.0kb upstream 1.0kb upstream 1877 true Scaffold1508: 722288-724164 Capsella grandiflora
Cagra.1508s0168 1.0kb upstream 1.0kb upstream 1000 false Scaffold1508: 723165-724164 Capsella grandiflora
Cagra.1508s0168 1.0kb downstream 1.0kb downstream 1877 true Scaffold1508: 721288-723164 Capsella grandiflora
Cagra.1508s0168 1.0kb downstream 1.0kb downstream 1000 false Scaffold1508: 721288-722287 Capsella grandiflora
Cagra.1508s0168 2.0kb upstream 2.0kb upstream 2877 true Scaffold1508: 722288-725164 Capsella grandiflora
Cagra.1508s0168 2.0kb upstream 2.0kb upstream 2000 false Scaffold1508: 723165-725164 Capsella grandiflora
Cagra.1508s0168 2.0kb downstream 2.0kb downstream 2877 true Scaffold1508: 720288-723164 Capsella grandiflora
Cagra.1508s0168 2.0kb downstream 2.0kb downstream 2000 false Scaffold1508: 720288-722287 Capsella grandiflora
Cagra.1508s0168 5.0kb upstream 5.0kb upstream 5877 true Scaffold1508: 722288-728164 Capsella grandiflora
Cagra.1508s0168 5.0kb upstream 5.0kb upstream 5000 false Scaffold1508: 723165-728164 Capsella grandiflora
Cagra.1508s0168 5.0kb downstream 5.0kb downstream 5877 true Scaffold1508: 717288-723164 Capsella grandiflora
Cagra.1508s0168 5.0kb downstream 5.0kb downstream 5000 false Scaffold1508: 717288-722287 Capsella grandiflora
Cagra.1508s0168 10.0kb upstream 10.0kb upstream 10877 true Scaffold1508: 722288-733164 Capsella grandiflora
Cagra.1508s0168 10.0kb upstream 10.0kb upstream 10000 false Scaffold1508: 723165-733164 Capsella grandiflora
Cagra.1508s0168 10.0kb downstream 10.0kb downstream 10877 true Scaffold1508: 712288-723164 Capsella grandiflora
Cagra.1508s0168 10.0kb downstream 10.0kb downstream 10000 false Scaffold1508: 712288-722287 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378578 5261 Brassicaceae View MSA
123833502 5264 Brassicales-Malvales View MSA
124342197 5266 SBM View MSA
124242965 5268 Malvidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain