Gene : Cagra.1725s0030 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23076:SF44 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC Genomic Order:  30
Name:  ? Cagra.1725s0030 Secondary Identifier:  ? PAC:28896060
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1725s0030 0.5kb upstream 0.5kb upstream 6386 true Scaffold1725: 112590-118975 Capsella grandiflora
Cagra.1725s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold1725: 112590-113089 Capsella grandiflora
Cagra.1725s0030 0.5kb downstream 0.5kb downstream 6386 true Scaffold1725: 113090-119475 Capsella grandiflora
Cagra.1725s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold1725: 118976-119475 Capsella grandiflora
Cagra.1725s0030 1.0kb upstream 1.0kb upstream 6886 true Scaffold1725: 112090-118975 Capsella grandiflora
Cagra.1725s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold1725: 112090-113089 Capsella grandiflora
Cagra.1725s0030 1.0kb downstream 1.0kb downstream 6886 true Scaffold1725: 113090-119975 Capsella grandiflora
Cagra.1725s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold1725: 118976-119975 Capsella grandiflora
Cagra.1725s0030 2.0kb upstream 2.0kb upstream 7886 true Scaffold1725: 111090-118975 Capsella grandiflora
Cagra.1725s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold1725: 111090-113089 Capsella grandiflora
Cagra.1725s0030 2.0kb downstream 2.0kb downstream 7886 true Scaffold1725: 113090-120975 Capsella grandiflora
Cagra.1725s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold1725: 118976-120975 Capsella grandiflora
Cagra.1725s0030 5.0kb upstream 5.0kb upstream 10886 true Scaffold1725: 108090-118975 Capsella grandiflora
Cagra.1725s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold1725: 108090-113089 Capsella grandiflora
Cagra.1725s0030 5.0kb downstream 5.0kb downstream 10886 true Scaffold1725: 113090-123975 Capsella grandiflora
Cagra.1725s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold1725: 118976-123975 Capsella grandiflora
Cagra.1725s0030 10.0kb upstream 10.0kb upstream 15886 true Scaffold1725: 103090-118975 Capsella grandiflora
Cagra.1725s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold1725: 103090-113089 Capsella grandiflora
Cagra.1725s0030 10.0kb downstream 10.0kb downstream 15886 true Scaffold1725: 113090-128975 Capsella grandiflora
Cagra.1725s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold1725: 118976-128975 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371021 5261 Brassicaceae View MSA
123832748 5264 Brassicales-Malvales View MSA
124338369 5266 SBM View MSA
124238329 5268 Malvidae View MSA
124065156 5270 Rosid View MSA
123736901 5271 Pentapetalae View MSA
122790141 5272 Eudicot View MSA
122047012 5273 Angiosperm View MSA
121345468 5274 Embryophyte View MSA
123380221 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain