Gene : Cagra.1671s0405 C. grandiflora v1.1
Defline:  (1 of 1) KOG3117 - Protein involved in rRNA processing Genomic Order:  405
Name:  ? Cagra.1671s0405 Secondary Identifier:  ? PAC:28914315
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0405 0.5kb upstream 0.5kb upstream 2794 true Scaffold1671: 1452307-1455100 Capsella grandiflora
Cagra.1671s0405 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 1452307-1452806 Capsella grandiflora
Cagra.1671s0405 0.5kb downstream 0.5kb downstream 2794 true Scaffold1671: 1452807-1455600 Capsella grandiflora
Cagra.1671s0405 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 1455101-1455600 Capsella grandiflora
Cagra.1671s0405 1.0kb upstream 1.0kb upstream 3294 true Scaffold1671: 1451807-1455100 Capsella grandiflora
Cagra.1671s0405 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 1451807-1452806 Capsella grandiflora
Cagra.1671s0405 1.0kb downstream 1.0kb downstream 3294 true Scaffold1671: 1452807-1456100 Capsella grandiflora
Cagra.1671s0405 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 1455101-1456100 Capsella grandiflora
Cagra.1671s0405 2.0kb upstream 2.0kb upstream 4294 true Scaffold1671: 1450807-1455100 Capsella grandiflora
Cagra.1671s0405 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 1450807-1452806 Capsella grandiflora
Cagra.1671s0405 2.0kb downstream 2.0kb downstream 4294 true Scaffold1671: 1452807-1457100 Capsella grandiflora
Cagra.1671s0405 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 1455101-1457100 Capsella grandiflora
Cagra.1671s0405 5.0kb upstream 5.0kb upstream 7294 true Scaffold1671: 1447807-1455100 Capsella grandiflora
Cagra.1671s0405 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 1447807-1452806 Capsella grandiflora
Cagra.1671s0405 5.0kb downstream 5.0kb downstream 7294 true Scaffold1671: 1452807-1460100 Capsella grandiflora
Cagra.1671s0405 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 1455101-1460100 Capsella grandiflora
Cagra.1671s0405 10.0kb upstream 10.0kb upstream 12294 true Scaffold1671: 1442807-1455100 Capsella grandiflora
Cagra.1671s0405 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 1442807-1452806 Capsella grandiflora
Cagra.1671s0405 10.0kb downstream 10.0kb downstream 12294 true Scaffold1671: 1452807-1465100 Capsella grandiflora
Cagra.1671s0405 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 1455101-1465100 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377524 5261 Brassicaceae View MSA
123827972 5264 Brassicales-Malvales View MSA
124344491 5266 SBM View MSA
124242828 5268 Malvidae View MSA
124066836 5270 Rosid View MSA
123740201 5271 Pentapetalae View MSA
122793793 5272 Eudicot View MSA
122047581 5273 Angiosperm View MSA
121345702 5274 Embryophyte View MSA
123380258 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain