Gene : Cagra.1671s0187 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22600:SF0 - BETA-HEXOSAMINIDASE Genomic Order:  187
Name:  ? Cagra.1671s0187 Secondary Identifier:  ? PAC:28913923
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6902 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0187 0.5kb upstream 0.5kb upstream 3053 true Scaffold1671: 706991-710043 Capsella grandiflora
Cagra.1671s0187 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 706991-707490 Capsella grandiflora
Cagra.1671s0187 0.5kb downstream 0.5kb downstream 3053 true Scaffold1671: 707491-710543 Capsella grandiflora
Cagra.1671s0187 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 710044-710543 Capsella grandiflora
Cagra.1671s0187 1.0kb upstream 1.0kb upstream 3553 true Scaffold1671: 706491-710043 Capsella grandiflora
Cagra.1671s0187 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 706491-707490 Capsella grandiflora
Cagra.1671s0187 1.0kb downstream 1.0kb downstream 3553 true Scaffold1671: 707491-711043 Capsella grandiflora
Cagra.1671s0187 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 710044-711043 Capsella grandiflora
Cagra.1671s0187 2.0kb upstream 2.0kb upstream 4553 true Scaffold1671: 705491-710043 Capsella grandiflora
Cagra.1671s0187 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 705491-707490 Capsella grandiflora
Cagra.1671s0187 2.0kb downstream 2.0kb downstream 4553 true Scaffold1671: 707491-712043 Capsella grandiflora
Cagra.1671s0187 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 710044-712043 Capsella grandiflora
Cagra.1671s0187 5.0kb upstream 5.0kb upstream 7553 true Scaffold1671: 702491-710043 Capsella grandiflora
Cagra.1671s0187 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 702491-707490 Capsella grandiflora
Cagra.1671s0187 5.0kb downstream 5.0kb downstream 7553 true Scaffold1671: 707491-715043 Capsella grandiflora
Cagra.1671s0187 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 710044-715043 Capsella grandiflora
Cagra.1671s0187 10.0kb upstream 10.0kb upstream 12553 true Scaffold1671: 697491-710043 Capsella grandiflora
Cagra.1671s0187 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 697491-707490 Capsella grandiflora
Cagra.1671s0187 10.0kb downstream 10.0kb downstream 12553 true Scaffold1671: 707491-720043 Capsella grandiflora
Cagra.1671s0187 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 710044-720043 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361529 5261 Brassicaceae View MSA
123831341 5264 Brassicales-Malvales View MSA
124339325 5266 SBM View MSA
124240039 5268 Malvidae View MSA
124063455 5270 Rosid View MSA
123738859 5271 Pentapetalae View MSA
122789804 5272 Eudicot View MSA
122047899 5273 Angiosperm View MSA
121347698 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain