Gene : Cagra.1671s0020 C. grandiflora v1.1
Defline:  (1 of 2) PTHR13763 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 Genomic Order:  20
Name:  ? Cagra.1671s0020 Secondary Identifier:  ? PAC:28913914
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0020 0.5kb upstream 0.5kb upstream 4099 true Scaffold1671: 61593-65691 Capsella grandiflora
Cagra.1671s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 61593-62092 Capsella grandiflora
Cagra.1671s0020 0.5kb downstream 0.5kb downstream 4099 true Scaffold1671: 62093-66191 Capsella grandiflora
Cagra.1671s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 65692-66191 Capsella grandiflora
Cagra.1671s0020 1.0kb upstream 1.0kb upstream 4599 true Scaffold1671: 61093-65691 Capsella grandiflora
Cagra.1671s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 61093-62092 Capsella grandiflora
Cagra.1671s0020 1.0kb downstream 1.0kb downstream 4599 true Scaffold1671: 62093-66691 Capsella grandiflora
Cagra.1671s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 65692-66691 Capsella grandiflora
Cagra.1671s0020 2.0kb upstream 2.0kb upstream 5599 true Scaffold1671: 60093-65691 Capsella grandiflora
Cagra.1671s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 60093-62092 Capsella grandiflora
Cagra.1671s0020 2.0kb downstream 2.0kb downstream 5599 true Scaffold1671: 62093-67691 Capsella grandiflora
Cagra.1671s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 65692-67691 Capsella grandiflora
Cagra.1671s0020 5.0kb upstream 5.0kb upstream 8599 true Scaffold1671: 57093-65691 Capsella grandiflora
Cagra.1671s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 57093-62092 Capsella grandiflora
Cagra.1671s0020 5.0kb downstream 5.0kb downstream 8599 true Scaffold1671: 62093-70691 Capsella grandiflora
Cagra.1671s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 65692-70691 Capsella grandiflora
Cagra.1671s0020 10.0kb upstream 10.0kb upstream 13599 true Scaffold1671: 52093-65691 Capsella grandiflora
Cagra.1671s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 52093-62092 Capsella grandiflora
Cagra.1671s0020 10.0kb downstream 10.0kb downstream 13599 true Scaffold1671: 62093-75691 Capsella grandiflora
Cagra.1671s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 65692-75691 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368475 5261 Brassicaceae View MSA
123832266 5264 Brassicales-Malvales View MSA
124344562 5266 SBM View MSA
124249547 5268 Malvidae View MSA
124074324 5270 Rosid View MSA
123745741 5271 Pentapetalae View MSA
122790490 5272 Eudicot View MSA
122049651 5273 Angiosperm View MSA
121346797 5274 Embryophyte View MSA
123380447 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain