Gene : Cagra.1671s0030 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22904:SF312 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  30
Name:  ? Cagra.1671s0030 Secondary Identifier:  ? PAC:28913921
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0030 0.5kb upstream 0.5kb upstream 2777 true Scaffold1671: 99454-102230 Capsella grandiflora
Cagra.1671s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 99454-99953 Capsella grandiflora
Cagra.1671s0030 0.5kb downstream 0.5kb downstream 2777 true Scaffold1671: 99954-102730 Capsella grandiflora
Cagra.1671s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 102231-102730 Capsella grandiflora
Cagra.1671s0030 1.0kb upstream 1.0kb upstream 3277 true Scaffold1671: 98954-102230 Capsella grandiflora
Cagra.1671s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 98954-99953 Capsella grandiflora
Cagra.1671s0030 1.0kb downstream 1.0kb downstream 3277 true Scaffold1671: 99954-103230 Capsella grandiflora
Cagra.1671s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 102231-103230 Capsella grandiflora
Cagra.1671s0030 2.0kb upstream 2.0kb upstream 4277 true Scaffold1671: 97954-102230 Capsella grandiflora
Cagra.1671s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 97954-99953 Capsella grandiflora
Cagra.1671s0030 2.0kb downstream 2.0kb downstream 4277 true Scaffold1671: 99954-104230 Capsella grandiflora
Cagra.1671s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 102231-104230 Capsella grandiflora
Cagra.1671s0030 5.0kb upstream 5.0kb upstream 7277 true Scaffold1671: 94954-102230 Capsella grandiflora
Cagra.1671s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 94954-99953 Capsella grandiflora
Cagra.1671s0030 5.0kb downstream 5.0kb downstream 7277 true Scaffold1671: 99954-107230 Capsella grandiflora
Cagra.1671s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 102231-107230 Capsella grandiflora
Cagra.1671s0030 10.0kb upstream 10.0kb upstream 12277 true Scaffold1671: 89954-102230 Capsella grandiflora
Cagra.1671s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 89954-99953 Capsella grandiflora
Cagra.1671s0030 10.0kb downstream 10.0kb downstream 12277 true Scaffold1671: 99954-112230 Capsella grandiflora
Cagra.1671s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 102231-112230 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368149 5261 Brassicaceae View MSA
123828408 5264 Brassicales-Malvales View MSA
124339676 5266 SBM View MSA
124254043 5268 Malvidae View MSA
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain