Gene : Cagra.1671s0046 C. grandiflora v1.1
Defline:  (1 of 1) PTHR21660:SF6 - F19P19.27 PROTEIN Genomic Order:  46
Name:  ? Cagra.1671s0046 Secondary Identifier:  ? PAC:28914286
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1121 Capsella grandiflora pathologic  
Cgrandiflora PWY-321 Capsella grandiflora pathologic  
Cgrandiflora PWY-5148 Capsella grandiflora pathologic  
Cgrandiflora PWY-6733 Capsella grandiflora pathologic  
Cgrandiflora PWY-735 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1671s0046 0.5kb upstream 0.5kb upstream 1409 true Scaffold1671: 179279-180687 Capsella grandiflora
Cagra.1671s0046 0.5kb upstream 0.5kb upstream 500 false Scaffold1671: 180188-180687 Capsella grandiflora
Cagra.1671s0046 0.5kb downstream 0.5kb downstream 1409 true Scaffold1671: 178779-180187 Capsella grandiflora
Cagra.1671s0046 0.5kb downstream 0.5kb downstream 500 false Scaffold1671: 178779-179278 Capsella grandiflora
Cagra.1671s0046 1.0kb upstream 1.0kb upstream 1909 true Scaffold1671: 179279-181187 Capsella grandiflora
Cagra.1671s0046 1.0kb upstream 1.0kb upstream 1000 false Scaffold1671: 180188-181187 Capsella grandiflora
Cagra.1671s0046 1.0kb downstream 1.0kb downstream 1909 true Scaffold1671: 178279-180187 Capsella grandiflora
Cagra.1671s0046 1.0kb downstream 1.0kb downstream 1000 false Scaffold1671: 178279-179278 Capsella grandiflora
Cagra.1671s0046 2.0kb upstream 2.0kb upstream 2909 true Scaffold1671: 179279-182187 Capsella grandiflora
Cagra.1671s0046 2.0kb upstream 2.0kb upstream 2000 false Scaffold1671: 180188-182187 Capsella grandiflora
Cagra.1671s0046 2.0kb downstream 2.0kb downstream 2909 true Scaffold1671: 177279-180187 Capsella grandiflora
Cagra.1671s0046 2.0kb downstream 2.0kb downstream 2000 false Scaffold1671: 177279-179278 Capsella grandiflora
Cagra.1671s0046 5.0kb upstream 5.0kb upstream 5909 true Scaffold1671: 179279-185187 Capsella grandiflora
Cagra.1671s0046 5.0kb upstream 5.0kb upstream 5000 false Scaffold1671: 180188-185187 Capsella grandiflora
Cagra.1671s0046 5.0kb downstream 5.0kb downstream 5909 true Scaffold1671: 174279-180187 Capsella grandiflora
Cagra.1671s0046 5.0kb downstream 5.0kb downstream 5000 false Scaffold1671: 174279-179278 Capsella grandiflora
Cagra.1671s0046 10.0kb upstream 10.0kb upstream 10909 true Scaffold1671: 179279-190187 Capsella grandiflora
Cagra.1671s0046 10.0kb upstream 10.0kb upstream 10000 false Scaffold1671: 180188-190187 Capsella grandiflora
Cagra.1671s0046 10.0kb downstream 10.0kb downstream 10909 true Scaffold1671: 169279-180187 Capsella grandiflora
Cagra.1671s0046 10.0kb downstream 10.0kb downstream 10000 false Scaffold1671: 169279-179278 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368496 5261 Brassicaceae View MSA
123835982 5264 Brassicales-Malvales View MSA
124345518 5266 SBM View MSA
124241074 5268 Malvidae View MSA
124063783 5270 Rosid View MSA
123750481 5271 Pentapetalae View MSA
122787184 5272 Eudicot View MSA
122043705 5273 Angiosperm View MSA
121345326 5274 Embryophyte View MSA
123428627 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain