Gene : Cagra.1670s0019 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Genomic Order:  19
Name:  ? Cagra.1670s0019 Secondary Identifier:  ? PAC:28894682
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6441 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1670s0019 0.5kb upstream 0.5kb upstream 6168 true Scaffold1670: 70338-76505 Capsella grandiflora
Cagra.1670s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold1670: 70338-70837 Capsella grandiflora
Cagra.1670s0019 0.5kb downstream 0.5kb downstream 6168 true Scaffold1670: 70838-77005 Capsella grandiflora
Cagra.1670s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold1670: 76506-77005 Capsella grandiflora
Cagra.1670s0019 1.0kb upstream 1.0kb upstream 6668 true Scaffold1670: 69838-76505 Capsella grandiflora
Cagra.1670s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold1670: 69838-70837 Capsella grandiflora
Cagra.1670s0019 1.0kb downstream 1.0kb downstream 6668 true Scaffold1670: 70838-77505 Capsella grandiflora
Cagra.1670s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold1670: 76506-77505 Capsella grandiflora
Cagra.1670s0019 2.0kb upstream 2.0kb upstream 7668 true Scaffold1670: 68838-76505 Capsella grandiflora
Cagra.1670s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold1670: 68838-70837 Capsella grandiflora
Cagra.1670s0019 2.0kb downstream 2.0kb downstream 7668 true Scaffold1670: 70838-78505 Capsella grandiflora
Cagra.1670s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold1670: 76506-78505 Capsella grandiflora
Cagra.1670s0019 5.0kb upstream 5.0kb upstream 10668 true Scaffold1670: 65838-76505 Capsella grandiflora
Cagra.1670s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold1670: 65838-70837 Capsella grandiflora
Cagra.1670s0019 5.0kb downstream 5.0kb downstream 10668 true Scaffold1670: 70838-81505 Capsella grandiflora
Cagra.1670s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold1670: 76506-81505 Capsella grandiflora
Cagra.1670s0019 10.0kb upstream 10.0kb upstream 15668 true Scaffold1670: 60838-76505 Capsella grandiflora
Cagra.1670s0019 10.0kb upstream 10.0kb upstream 10000 false Scaffold1670: 60838-70837 Capsella grandiflora
Cagra.1670s0019 10.0kb downstream 10.0kb downstream 15668 true Scaffold1670: 70838-86505 Capsella grandiflora
Cagra.1670s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold1670: 76506-86505 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376165 5261 Brassicaceae View MSA
123829326 5264 Brassicales-Malvales View MSA
124336608 5266 SBM View MSA
124249535 5268 Malvidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain