Gene : Cagra.1934s0004 C. grandiflora v1.1
Defline:  (1 of 5) 3.2.1.15//3.2.1.67 - Polygalacturonase / Pectinase // Galacturan 1,4-alpha-galacturonidase / Poly(galacturonate) hydrolase Genomic Order:  4
Name:  ? Cagra.1934s0004 Secondary Identifier:  ? PAC:28917200
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1934s0004 0.5kb upstream 0.5kb upstream 1917 true Scaffold1934: 18951-20867 Capsella grandiflora
Cagra.1934s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold1934: 18951-19450 Capsella grandiflora
Cagra.1934s0004 0.5kb downstream 0.5kb downstream 1648 true Scaffold1934: 19451-21098 Capsella grandiflora
Cagra.1934s0004 0.5kb downstream 0.5kb downstream 231 false Scaffold1934: 20868-21098 Capsella grandiflora
Cagra.1934s0004 1.0kb upstream 1.0kb upstream 2417 true Scaffold1934: 18451-20867 Capsella grandiflora
Cagra.1934s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold1934: 18451-19450 Capsella grandiflora
Cagra.1934s0004 1.0kb downstream 1.0kb downstream 1648 true Scaffold1934: 19451-21098 Capsella grandiflora
Cagra.1934s0004 1.0kb downstream 1.0kb downstream 231 false Scaffold1934: 20868-21098 Capsella grandiflora
Cagra.1934s0004 2.0kb upstream 2.0kb upstream 3417 true Scaffold1934: 17451-20867 Capsella grandiflora
Cagra.1934s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold1934: 17451-19450 Capsella grandiflora
Cagra.1934s0004 2.0kb downstream 2.0kb downstream 1648 true Scaffold1934: 19451-21098 Capsella grandiflora
Cagra.1934s0004 2.0kb downstream 2.0kb downstream 231 false Scaffold1934: 20868-21098 Capsella grandiflora
Cagra.1934s0004 5.0kb upstream 5.0kb upstream 6417 true Scaffold1934: 14451-20867 Capsella grandiflora
Cagra.1934s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold1934: 14451-19450 Capsella grandiflora
Cagra.1934s0004 5.0kb downstream 5.0kb downstream 1648 true Scaffold1934: 19451-21098 Capsella grandiflora
Cagra.1934s0004 5.0kb downstream 5.0kb downstream 231 false Scaffold1934: 20868-21098 Capsella grandiflora
Cagra.1934s0004 10.0kb upstream 10.0kb upstream 11417 true Scaffold1934: 9451-20867 Capsella grandiflora
Cagra.1934s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold1934: 9451-19450 Capsella grandiflora
Cagra.1934s0004 10.0kb downstream 10.0kb downstream 1648 true Scaffold1934: 19451-21098 Capsella grandiflora
Cagra.1934s0004 10.0kb downstream 10.0kb downstream 231 false Scaffold1934: 20868-21098 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371586 5261 Brassicaceae View MSA
123837525 5264 Brassicales-Malvales View MSA
124337889 5266 SBM View MSA
124240129 5268 Malvidae View MSA
124074410 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain