Gene : Cagra.1696s0011 C. grandiflora v1.1
Defline:  (1 of 4) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED Genomic Order:  11
Name:  ? Cagra.1696s0011 Secondary Identifier:  ? PAC:28916112
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1696s0011 0.5kb upstream 0.5kb upstream 4188 true Scaffold1696: 39595-43782 Capsella grandiflora
Cagra.1696s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold1696: 43283-43782 Capsella grandiflora
Cagra.1696s0011 0.5kb downstream 0.5kb downstream 4188 true Scaffold1696: 39095-43282 Capsella grandiflora
Cagra.1696s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold1696: 39095-39594 Capsella grandiflora
Cagra.1696s0011 1.0kb upstream 1.0kb upstream 4688 true Scaffold1696: 39595-44282 Capsella grandiflora
Cagra.1696s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold1696: 43283-44282 Capsella grandiflora
Cagra.1696s0011 1.0kb downstream 1.0kb downstream 4688 true Scaffold1696: 38595-43282 Capsella grandiflora
Cagra.1696s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold1696: 38595-39594 Capsella grandiflora
Cagra.1696s0011 2.0kb upstream 2.0kb upstream 5688 true Scaffold1696: 39595-45282 Capsella grandiflora
Cagra.1696s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold1696: 43283-45282 Capsella grandiflora
Cagra.1696s0011 2.0kb downstream 2.0kb downstream 5688 true Scaffold1696: 37595-43282 Capsella grandiflora
Cagra.1696s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold1696: 37595-39594 Capsella grandiflora
Cagra.1696s0011 5.0kb upstream 5.0kb upstream 8688 true Scaffold1696: 39595-48282 Capsella grandiflora
Cagra.1696s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold1696: 43283-48282 Capsella grandiflora
Cagra.1696s0011 5.0kb downstream 5.0kb downstream 8688 true Scaffold1696: 34595-43282 Capsella grandiflora
Cagra.1696s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold1696: 34595-39594 Capsella grandiflora
Cagra.1696s0011 10.0kb upstream 10.0kb upstream 13688 true Scaffold1696: 39595-53282 Capsella grandiflora
Cagra.1696s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold1696: 43283-53282 Capsella grandiflora
Cagra.1696s0011 10.0kb downstream 10.0kb downstream 13688 true Scaffold1696: 29595-43282 Capsella grandiflora
Cagra.1696s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold1696: 29595-39594 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360717 5261 Brassicaceae View MSA
123839797 5264 Brassicales-Malvales View MSA
124343123 5266 SBM View MSA
124245225 5268 Malvidae View MSA
124064633 5270 Rosid View MSA
123747170 5271 Pentapetalae View MSA
122796977 5272 Eudicot View MSA
122046858 5273 Angiosperm View MSA
121349950 5274 Embryophyte View MSA
123381513 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain