Gene : Cagra.2117s0043 C. grandiflora v1.1
Defline:  (1 of 4) PTHR11615:SF116 - CASPARIAN STRIP MEMBRANE PROTEIN 1-RELATED Genomic Order:  43
Name:  ? Cagra.2117s0043 Secondary Identifier:  ? PAC:28905624
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2117s0043 0.5kb upstream 0.5kb upstream 1289 true Scaffold2117: 160616-161904 Capsella grandiflora
Cagra.2117s0043 0.5kb upstream 0.5kb upstream 500 false Scaffold2117: 161405-161904 Capsella grandiflora
Cagra.2117s0043 0.5kb downstream 0.5kb downstream 1289 true Scaffold2117: 160116-161404 Capsella grandiflora
Cagra.2117s0043 0.5kb downstream 0.5kb downstream 500 false Scaffold2117: 160116-160615 Capsella grandiflora
Cagra.2117s0043 1.0kb upstream 1.0kb upstream 1789 true Scaffold2117: 160616-162404 Capsella grandiflora
Cagra.2117s0043 1.0kb upstream 1.0kb upstream 1000 false Scaffold2117: 161405-162404 Capsella grandiflora
Cagra.2117s0043 1.0kb downstream 1.0kb downstream 1789 true Scaffold2117: 159616-161404 Capsella grandiflora
Cagra.2117s0043 1.0kb downstream 1.0kb downstream 1000 false Scaffold2117: 159616-160615 Capsella grandiflora
Cagra.2117s0043 2.0kb upstream 2.0kb upstream 2789 true Scaffold2117: 160616-163404 Capsella grandiflora
Cagra.2117s0043 2.0kb upstream 2.0kb upstream 2000 false Scaffold2117: 161405-163404 Capsella grandiflora
Cagra.2117s0043 2.0kb downstream 2.0kb downstream 2789 true Scaffold2117: 158616-161404 Capsella grandiflora
Cagra.2117s0043 2.0kb downstream 2.0kb downstream 2000 false Scaffold2117: 158616-160615 Capsella grandiflora
Cagra.2117s0043 5.0kb upstream 5.0kb upstream 5789 true Scaffold2117: 160616-166404 Capsella grandiflora
Cagra.2117s0043 5.0kb upstream 5.0kb upstream 5000 false Scaffold2117: 161405-166404 Capsella grandiflora
Cagra.2117s0043 5.0kb downstream 5.0kb downstream 5789 true Scaffold2117: 155616-161404 Capsella grandiflora
Cagra.2117s0043 5.0kb downstream 5.0kb downstream 5000 false Scaffold2117: 155616-160615 Capsella grandiflora
Cagra.2117s0043 10.0kb upstream 10.0kb upstream 10789 true Scaffold2117: 160616-171404 Capsella grandiflora
Cagra.2117s0043 10.0kb upstream 10.0kb upstream 10000 false Scaffold2117: 161405-171404 Capsella grandiflora
Cagra.2117s0043 10.0kb downstream 10.0kb downstream 10789 true Scaffold2117: 150616-161404 Capsella grandiflora
Cagra.2117s0043 10.0kb downstream 10.0kb downstream 10000 false Scaffold2117: 150616-160615 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343115 5261 Brassicaceae View MSA
123840781 5264 Brassicales-Malvales View MSA
124340578 5266 SBM View MSA
124251067 5268 Malvidae View MSA
124067511 5270 Rosid View MSA
123750360 5271 Pentapetalae View MSA
122793226 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain