Gene : Cagra.2108s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22937:SF39 - E3 UBIQUITIN-PROTEIN LIGASE TOPORS-RELATED Genomic Order:  2
Name:  ? Cagra.2108s0002 Secondary Identifier:  ? PAC:28912505
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2108s0002 0.5kb upstream 0.5kb upstream 4717 true Scaffold2108: 3757-8473 Capsella grandiflora
Cagra.2108s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold2108: 3757-4256 Capsella grandiflora
Cagra.2108s0002 0.5kb downstream 0.5kb downstream 4717 true Scaffold2108: 4257-8973 Capsella grandiflora
Cagra.2108s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold2108: 8474-8973 Capsella grandiflora
Cagra.2108s0002 1.0kb upstream 1.0kb upstream 5217 true Scaffold2108: 3257-8473 Capsella grandiflora
Cagra.2108s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold2108: 3257-4256 Capsella grandiflora
Cagra.2108s0002 1.0kb downstream 1.0kb downstream 5217 true Scaffold2108: 4257-9473 Capsella grandiflora
Cagra.2108s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold2108: 8474-9473 Capsella grandiflora
Cagra.2108s0002 2.0kb upstream 2.0kb upstream 6217 true Scaffold2108: 2257-8473 Capsella grandiflora
Cagra.2108s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold2108: 2257-4256 Capsella grandiflora
Cagra.2108s0002 2.0kb downstream 2.0kb downstream 6217 true Scaffold2108: 4257-10473 Capsella grandiflora
Cagra.2108s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold2108: 8474-10473 Capsella grandiflora
Cagra.2108s0002 5.0kb upstream 5.0kb upstream 8473 true Scaffold2108: 1-8473 Capsella grandiflora
Cagra.2108s0002 5.0kb upstream 5.0kb upstream 4256 false Scaffold2108: 1-4256 Capsella grandiflora
Cagra.2108s0002 5.0kb downstream 5.0kb downstream 9217 true Scaffold2108: 4257-13473 Capsella grandiflora
Cagra.2108s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold2108: 8474-13473 Capsella grandiflora
Cagra.2108s0002 10.0kb upstream 10.0kb upstream 8473 true Scaffold2108: 1-8473 Capsella grandiflora
Cagra.2108s0002 10.0kb upstream 10.0kb upstream 4256 false Scaffold2108: 1-4256 Capsella grandiflora
Cagra.2108s0002 10.0kb downstream 10.0kb downstream 14217 true Scaffold2108: 4257-18473 Capsella grandiflora
Cagra.2108s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold2108: 8474-18473 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363486 5261 Brassicaceae View MSA
123839264 5264 Brassicales-Malvales View MSA
124342938 5266 SBM View MSA
124251049 5268 Malvidae View MSA
124064836 5270 Rosid View MSA
123742446 5271 Pentapetalae View MSA
122794667 5272 Eudicot View MSA
122041615 5273 Angiosperm View MSA
121349825 5274 Embryophyte View MSA
123426689 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain