Gene : Cagra.2111s0002 C. grandiflora v1.1
Defline:  (1 of 1) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Genomic Order:  2
Name:  ? Cagra.2111s0002 Secondary Identifier:  ? PAC:28904064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2111s0002 0.5kb upstream 0.5kb upstream 2369 true Scaffold2111: 6665-9033 Capsella grandiflora
Cagra.2111s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold2111: 8534-9033 Capsella grandiflora
Cagra.2111s0002 0.5kb downstream 0.5kb downstream 2369 true Scaffold2111: 6165-8533 Capsella grandiflora
Cagra.2111s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold2111: 6165-6664 Capsella grandiflora
Cagra.2111s0002 1.0kb upstream 1.0kb upstream 2869 true Scaffold2111: 6665-9533 Capsella grandiflora
Cagra.2111s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold2111: 8534-9533 Capsella grandiflora
Cagra.2111s0002 1.0kb downstream 1.0kb downstream 2869 true Scaffold2111: 5665-8533 Capsella grandiflora
Cagra.2111s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold2111: 5665-6664 Capsella grandiflora
Cagra.2111s0002 2.0kb upstream 2.0kb upstream 3869 true Scaffold2111: 6665-10533 Capsella grandiflora
Cagra.2111s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold2111: 8534-10533 Capsella grandiflora
Cagra.2111s0002 2.0kb downstream 2.0kb downstream 3869 true Scaffold2111: 4665-8533 Capsella grandiflora
Cagra.2111s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold2111: 4665-6664 Capsella grandiflora
Cagra.2111s0002 5.0kb upstream 5.0kb upstream 6869 true Scaffold2111: 6665-13533 Capsella grandiflora
Cagra.2111s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold2111: 8534-13533 Capsella grandiflora
Cagra.2111s0002 5.0kb downstream 5.0kb downstream 6869 true Scaffold2111: 1665-8533 Capsella grandiflora
Cagra.2111s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold2111: 1665-6664 Capsella grandiflora
Cagra.2111s0002 10.0kb upstream 10.0kb upstream 10656 true Scaffold2111: 6665-17320 Capsella grandiflora
Cagra.2111s0002 10.0kb upstream 10.0kb upstream 8787 false Scaffold2111: 8534-17320 Capsella grandiflora
Cagra.2111s0002 10.0kb downstream 10.0kb downstream 8533 true Scaffold2111: 1-8533 Capsella grandiflora
Cagra.2111s0002 10.0kb downstream 10.0kb downstream 6664 false Scaffold2111: 1-6664 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375378 5261 Brassicaceae View MSA
123835777 5264 Brassicales-Malvales View MSA
124340318 5266 SBM View MSA
124243670 5268 Malvidae View MSA
124060923 5270 Rosid View MSA
123747384 5271 Pentapetalae View MSA
122791498 5272 Eudicot View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain