Gene : Cagra.2093s0006 C. grandiflora v1.1
Defline:  (1 of 5) PTHR16223:SF29 - TRANSCRIPTION FACTOR BHLH117-RELATED Genomic Order:  6
Name:  ? Cagra.2093s0006 Secondary Identifier:  ? PAC:28899545
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2093s0006 0.5kb upstream 0.5kb upstream 2825 true Scaffold2093: 13384-16208 Capsella grandiflora
Cagra.2093s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold2093: 15709-16208 Capsella grandiflora
Cagra.2093s0006 0.5kb downstream 0.5kb downstream 2825 true Scaffold2093: 12884-15708 Capsella grandiflora
Cagra.2093s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold2093: 12884-13383 Capsella grandiflora
Cagra.2093s0006 1.0kb upstream 1.0kb upstream 3325 true Scaffold2093: 13384-16708 Capsella grandiflora
Cagra.2093s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold2093: 15709-16708 Capsella grandiflora
Cagra.2093s0006 1.0kb downstream 1.0kb downstream 3325 true Scaffold2093: 12384-15708 Capsella grandiflora
Cagra.2093s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold2093: 12384-13383 Capsella grandiflora
Cagra.2093s0006 2.0kb upstream 2.0kb upstream 4325 true Scaffold2093: 13384-17708 Capsella grandiflora
Cagra.2093s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold2093: 15709-17708 Capsella grandiflora
Cagra.2093s0006 2.0kb downstream 2.0kb downstream 4325 true Scaffold2093: 11384-15708 Capsella grandiflora
Cagra.2093s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold2093: 11384-13383 Capsella grandiflora
Cagra.2093s0006 5.0kb upstream 5.0kb upstream 7325 true Scaffold2093: 13384-20708 Capsella grandiflora
Cagra.2093s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold2093: 15709-20708 Capsella grandiflora
Cagra.2093s0006 5.0kb downstream 5.0kb downstream 7325 true Scaffold2093: 8384-15708 Capsella grandiflora
Cagra.2093s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold2093: 8384-13383 Capsella grandiflora
Cagra.2093s0006 10.0kb upstream 10.0kb upstream 12325 true Scaffold2093: 13384-25708 Capsella grandiflora
Cagra.2093s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold2093: 15709-25708 Capsella grandiflora
Cagra.2093s0006 10.0kb downstream 10.0kb downstream 12325 true Scaffold2093: 3384-15708 Capsella grandiflora
Cagra.2093s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold2093: 3384-13383 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377781 5261 Brassicaceae View MSA
123828377 5264 Brassicales-Malvales View MSA
124344596 5266 SBM View MSA
124238835 5268 Malvidae View MSA
124073794 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain