Gene : Cagra.1961s0081 C. grandiflora v1.1
Defline:  (1 of 33) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  81
Name:  ? Cagra.1961s0081 Secondary Identifier:  ? PAC:28911537
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1961s0081 0.5kb upstream 0.5kb upstream 2980 true Scaffold1961: 333575-336554 Capsella grandiflora
Cagra.1961s0081 0.5kb upstream 0.5kb upstream 500 false Scaffold1961: 336055-336554 Capsella grandiflora
Cagra.1961s0081 0.5kb downstream 0.5kb downstream 2980 true Scaffold1961: 333075-336054 Capsella grandiflora
Cagra.1961s0081 0.5kb downstream 0.5kb downstream 500 false Scaffold1961: 333075-333574 Capsella grandiflora
Cagra.1961s0081 1.0kb upstream 1.0kb upstream 3480 true Scaffold1961: 333575-337054 Capsella grandiflora
Cagra.1961s0081 1.0kb upstream 1.0kb upstream 1000 false Scaffold1961: 336055-337054 Capsella grandiflora
Cagra.1961s0081 1.0kb downstream 1.0kb downstream 3480 true Scaffold1961: 332575-336054 Capsella grandiflora
Cagra.1961s0081 1.0kb downstream 1.0kb downstream 1000 false Scaffold1961: 332575-333574 Capsella grandiflora
Cagra.1961s0081 2.0kb upstream 2.0kb upstream 4480 true Scaffold1961: 333575-338054 Capsella grandiflora
Cagra.1961s0081 2.0kb upstream 2.0kb upstream 2000 false Scaffold1961: 336055-338054 Capsella grandiflora
Cagra.1961s0081 2.0kb downstream 2.0kb downstream 4480 true Scaffold1961: 331575-336054 Capsella grandiflora
Cagra.1961s0081 2.0kb downstream 2.0kb downstream 2000 false Scaffold1961: 331575-333574 Capsella grandiflora
Cagra.1961s0081 5.0kb upstream 5.0kb upstream 7480 true Scaffold1961: 333575-341054 Capsella grandiflora
Cagra.1961s0081 5.0kb upstream 5.0kb upstream 5000 false Scaffold1961: 336055-341054 Capsella grandiflora
Cagra.1961s0081 5.0kb downstream 5.0kb downstream 7480 true Scaffold1961: 328575-336054 Capsella grandiflora
Cagra.1961s0081 5.0kb downstream 5.0kb downstream 5000 false Scaffold1961: 328575-333574 Capsella grandiflora
Cagra.1961s0081 10.0kb upstream 10.0kb upstream 12480 true Scaffold1961: 333575-346054 Capsella grandiflora
Cagra.1961s0081 10.0kb upstream 10.0kb upstream 10000 false Scaffold1961: 336055-346054 Capsella grandiflora
Cagra.1961s0081 10.0kb downstream 10.0kb downstream 12480 true Scaffold1961: 323575-336054 Capsella grandiflora
Cagra.1961s0081 10.0kb downstream 10.0kb downstream 10000 false Scaffold1961: 323575-333574 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122369512 5261 Brassicaceae View MSA
123832337 5264 Brassicales-Malvales View MSA
124343572 5266 SBM View MSA
124249654 5268 Malvidae View MSA
124066643 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain