Gene : Cagra.2194s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA Genomic Order:  1
Name:  ? Cagra.2194s0001 Secondary Identifier:  ? PAC:28902214
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2194s0001 0.5kb upstream 0.5kb upstream 3057 true Scaffold2194: 976-4032 Capsella grandiflora
Cagra.2194s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold2194: 3533-4032 Capsella grandiflora
Cagra.2194s0001 0.5kb downstream 0.5kb downstream 3057 true Scaffold2194: 476-3532 Capsella grandiflora
Cagra.2194s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold2194: 476-975 Capsella grandiflora
Cagra.2194s0001 1.0kb upstream 1.0kb upstream 3557 true Scaffold2194: 976-4532 Capsella grandiflora
Cagra.2194s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold2194: 3533-4532 Capsella grandiflora
Cagra.2194s0001 1.0kb downstream 1.0kb downstream 3532 true Scaffold2194: 1-3532 Capsella grandiflora
Cagra.2194s0001 1.0kb downstream 1.0kb downstream 975 false Scaffold2194: 1-975 Capsella grandiflora
Cagra.2194s0001 2.0kb upstream 2.0kb upstream 4557 true Scaffold2194: 976-5532 Capsella grandiflora
Cagra.2194s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold2194: 3533-5532 Capsella grandiflora
Cagra.2194s0001 2.0kb downstream 2.0kb downstream 3532 true Scaffold2194: 1-3532 Capsella grandiflora
Cagra.2194s0001 2.0kb downstream 2.0kb downstream 975 false Scaffold2194: 1-975 Capsella grandiflora
Cagra.2194s0001 5.0kb upstream 5.0kb upstream 6270 true Scaffold2194: 976-7245 Capsella grandiflora
Cagra.2194s0001 5.0kb upstream 5.0kb upstream 3713 false Scaffold2194: 3533-7245 Capsella grandiflora
Cagra.2194s0001 5.0kb downstream 5.0kb downstream 3532 true Scaffold2194: 1-3532 Capsella grandiflora
Cagra.2194s0001 5.0kb downstream 5.0kb downstream 975 false Scaffold2194: 1-975 Capsella grandiflora
Cagra.2194s0001 10.0kb upstream 10.0kb upstream 6270 true Scaffold2194: 976-7245 Capsella grandiflora
Cagra.2194s0001 10.0kb upstream 10.0kb upstream 3713 false Scaffold2194: 3533-7245 Capsella grandiflora
Cagra.2194s0001 10.0kb downstream 10.0kb downstream 3532 true Scaffold2194: 1-3532 Capsella grandiflora
Cagra.2194s0001 10.0kb downstream 10.0kb downstream 975 false Scaffold2194: 1-975 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364067 5261 Brassicaceae View MSA
123834541 5264 Brassicales-Malvales View MSA
124340629 5266 SBM View MSA
124240953 5268 Malvidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain