Protein Family : sigma factor A 122043866

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  74
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74 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30148.t000067 (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) R. communis v0.1 3241   30148: 408663-411903
Cucsa.073340 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA C. sativus v1.0 3448   scaffold00765: 932284-935731
orange1.1g010521m.g (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA C. sinensis v1.1 4372   scaffold00284: 180366-184737
AT1G64860 (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) A. thaliana TAIR10 SIGA 3040   Chr1: 24097913-24100952
Thhalv10002486m.g (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA E. salsugineum v1.0 3294   scaffold_4: 14893541-14896834
Ciclev10031289m.g (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA C. clementina v1.0 4457   scaffold_4: 17713728-17718184
Lus10009541.g (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA L. usitatissimum v1.0 3761   scaffold1331: 107987-111747
Lus10020365.g (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA L. usitatissimum v1.0 2451   scaffold641: 562074-564524
Gorai.004G255000 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA G. raimondii v2.1 4014   Chr04: 59194682-59198695
Gorai.007G247500 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA G. raimondii v2.1 4194   Chr07: 38315766-38319959
Thecc1EG025640 (1 of 1) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) T. cacao v1.1 5506   scaffold_5: 33853772-33859277
Migut.H00003 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. guttatus v2.0 3227   scaffold_8: 40109-43335
Araha.16335s0003 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA A. halleri v1.1 3024   Scaffold16335: 17355-20378
Cagra.2194s0001 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA C. grandiflora v1.1 2557   Scaffold2194: 976-3532
Glyma.09G223600 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA G. max Wm82.a2.v1 5036   Chr09: 44862449-44867484
Glyma.12G013300 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA G. max Wm82.a2.v1 4772   Chr12: 964404-969175
Brara.B02567 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA B. rapa FPsc v1.3 2897   A02: 18157630-18160526
Bostr.10180s0008 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA B. stricta v1.2 3050   Scaffold10180: 98996-102045
Medtr0172s0030 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. truncatula Mt4.0v1 5143   scaffold0172: 20750-25892
SapurV1A.0592s0030 (1 of 2) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) S. purpurea v1.0 4264   chr13: 10286848-10291111
SapurV1A.1456s0040 (1 of 2) K03086 - RNA polymerase primary sigma factor (SIG1, rpoD) S. purpurea v1.0 7806   Scaffold1456: 55499-63304
evm_27.TU.AmTr_v1.0_scaffold00011.228 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA A. trichopoda v1.0 7543   AmTr_v1.0_scaffold00011: 8649024-8656566
Traes_7DL_21A260D0C (1 of 4) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA T. aestivum v2.2 3422   ta_iwgsc_7dl_v1_3381933: 6082-9503
Eucgr.A02994 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA E. grandis v2.0 4347   Chr01: 44906922-44911268
Prupe.2G329700 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA P. persica v2.1 5003   Pp02: 30292770-30297772
GSMUA_Achr1G10700_001 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. acuminata v1 6104   chr1: 8084082-8090185
GSMUA_Achr11G08010_001 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. acuminata v1 4998   chr11: 6214511-6219508
Manes.09G130800 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. esculenta v6.1 4486   Chromosome09: 25243756-25248241
Manes.08G159000 (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA M. esculenta v6.1 4427   Chromosome08: 32172929-32177355
Kalax.0179s0033 (1 of 1) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA K. laxiflora v1.1 4083   scaffold_179: 224993-229075

74 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Cucsa.073340.1 C. sativus v1.0 122043866 sigma factor A 1 5273 Angiosperm
Ciclev10031289m C. clementina v1.0 122043866 sigma factor A 1 5273 Angiosperm
Gorai.007G247500.1 G. raimondii v2.1 122043866 sigma factor A 2 5273 Angiosperm
Thecc1EG025640t1 T. cacao v1.1 122043866 sigma factor A 1 5273 Angiosperm
Araha.16335s0003.1.p A. halleri v1.1 122043866 sigma factor A 1 5273 Angiosperm
Cagra.2194s0001.1.p C. grandiflora v1.1 122043866 sigma factor A 1 5273 Angiosperm
Glyma.12G013300.1.p G. max Wm82.a2.v1 122043866 sigma factor A 2 5273 Angiosperm
Bostr.10180s0008.1.p B. stricta v1.2 122043866 sigma factor A 1 5273 Angiosperm
SapurV1A.0592s0030.1.p S. purpurea v1.0 122043866 sigma factor A 2 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00011.228 A. trichopoda v1.0 122043866 sigma factor A 1 5273 Angiosperm
Traes_7DL_21A260D0C.1 T. aestivum v2.2 122043866 sigma factor A 1 5273 Angiosperm
GSMUA_Achr1P10700_001 M. acuminata v1 122043866 sigma factor A 2 5273 Angiosperm
GSMUA_Achr11P08010_001 M. acuminata v1 122043866 sigma factor A 2 5273 Angiosperm
Manes.08G159000.1.p M. esculenta v6.1 122043866 sigma factor A 2 5273 Angiosperm
Kalax.0179s0033.1.p K. laxiflora v1.1 122043866 sigma factor A 1 5273 Angiosperm
Seita.6G049900.1.p S. italica v2.2 122043866 sigma factor A 1 5273 Angiosperm
Bradi3g16040.1.p B. distachyon v3.1 122043866 sigma factor A 1 5273 Angiosperm
Brast03G023400.1.p B. stacei v1.1 122043866 sigma factor A 1 5273 Angiosperm
Aco013169.1 A. comosus v3 122043866 sigma factor A 1 5273 Angiosperm
Aqcoe3G142400.1.p A. coerulea v3.1 122043866 sigma factor A 1 5273 Angiosperm
LOC_Os08g06630.1 O. sativa v7.0 122043866 sigma factor A 1 5273 Angiosperm
Zosma47g00500.1 Z. marina v2.2 122043866 sigma factor A 1 5273 Angiosperm
Kaladp0538s0007.1.p K. fedtschenkoi v1.1 122043866 sigma factor A 1 5273 Angiosperm
AL2G19270.t1 A. lyrata v2.1 122043866 sigma factor A 1 5273 Angiosperm
Solyc06g072710.2.1 S. lycopersicum ITAG2.4 122043866 sigma factor A 2 5273 Angiosperm
Solyc03g097320.2.1 S. lycopersicum ITAG2.4 122043866 sigma factor A 2 5273 Angiosperm
AUR62024839-RA C. quinoa v1.0 122043866 sigma factor A 2 5273 Angiosperm
AUR62032380-RA C. quinoa v1.0 122043866 sigma factor A 2 5273 Angiosperm
Phvul.011G016400.1.p P. vulgaris v2.1 122043866 sigma factor A 1 5273 Angiosperm
Zm00008a015516_P01 Z. mays PH207 v1.1 122043866 sigma factor A 1 5273 Angiosperm