Gene : Glyma.12G013300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR SIGA Genomic Order:  133
Name:  ? Glyma.12G013300 Secondary Identifier:  ? PAC:30546276
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G013300 0.5kb upstream 0.5kb upstream 5272 true Chr12: 963904-969175 Glycine max
Glyma.12G013300 0.5kb upstream 0.5kb upstream 500 false Chr12: 963904-964403 Glycine max
Glyma.12G013300 0.5kb downstream 0.5kb downstream 5272 true Chr12: 964404-969675 Glycine max
Glyma.12G013300 0.5kb downstream 0.5kb downstream 500 false Chr12: 969176-969675 Glycine max
Glyma.12G013300 1.0kb upstream 1.0kb upstream 5772 true Chr12: 963404-969175 Glycine max
Glyma.12G013300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 963404-964403 Glycine max
Glyma.12G013300 1.0kb downstream 1.0kb downstream 5772 true Chr12: 964404-970175 Glycine max
Glyma.12G013300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 969176-970175 Glycine max
Glyma.12G013300 2.0kb upstream 2.0kb upstream 6772 true Chr12: 962404-969175 Glycine max
Glyma.12G013300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 962404-964403 Glycine max
Glyma.12G013300 2.0kb downstream 2.0kb downstream 6772 true Chr12: 964404-971175 Glycine max
Glyma.12G013300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 969176-971175 Glycine max
Glyma.12G013300 5.0kb upstream 5.0kb upstream 9772 true Chr12: 959404-969175 Glycine max
Glyma.12G013300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 959404-964403 Glycine max
Glyma.12G013300 5.0kb downstream 5.0kb downstream 9772 true Chr12: 964404-974175 Glycine max
Glyma.12G013300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 969176-974175 Glycine max
Glyma.12G013300 10.0kb upstream 10.0kb upstream 14772 true Chr12: 954404-969175 Glycine max
Glyma.12G013300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 954404-964403 Glycine max
Glyma.12G013300 10.0kb downstream 10.0kb downstream 14772 true Chr12: 964404-979175 Glycine max
Glyma.12G013300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 969176-979175 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301612 5265 Fabidae View MSA
124062387 5270 Rosid View MSA
123751324 5271 Pentapetalae View MSA
122790966 5272 Eudicot View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.5425 0.0 183.319 High High
cufflinks 11.6459 0.0 31.1596    
cufflinks 10.7215 0.0 28.7194    
cufflinks 11.3633 0.0 30.4131    
cufflinks 1.39987 0.0 4.70721   Low
cufflinks 0.95096 0.0 3.32425   Low
cufflinks 7.25323 0.0 19.8973    
cufflinks 9.08954 0.0 24.54    
cufflinks 1.50685 0.0 5.01235   Low
cufflinks 3.584        
cufflinks 1.699        
cufflinks 5.943        
cufflinks 0.271       Low
cufflinks 0.182       Low
cufflinks 2.94        
cufflinks 19.396     High High
cufflinks 0.159       Low
cufflinks 6.092        
cufflinks 5.337        
cufflinks 21.812     High High
cufflinks 3.096        
cufflinks 21.916     High High
cufflinks 11.392     High  
cufflinks 0.816        
cufflinks 25.051     High High
cufflinks 0.832        

0 Strain