Gene : Cagra.2471s0020 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31356:SF4 - L-ASCORBATE PEROXIDASE 6-RELATED Genomic Order:  20
Name:  ? Cagra.2471s0020 Secondary Identifier:  ? PAC:28915201
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-2261 Capsella grandiflora pathologic  
Cgrandiflora PWY-6959 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2471s0020 0.5kb upstream 0.5kb upstream 2824 true Scaffold2471: 67897-70720 Capsella grandiflora
Cagra.2471s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold2471: 67897-68396 Capsella grandiflora
Cagra.2471s0020 0.5kb downstream 0.5kb downstream 2824 true Scaffold2471: 68397-71220 Capsella grandiflora
Cagra.2471s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold2471: 70721-71220 Capsella grandiflora
Cagra.2471s0020 1.0kb upstream 1.0kb upstream 3324 true Scaffold2471: 67397-70720 Capsella grandiflora
Cagra.2471s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold2471: 67397-68396 Capsella grandiflora
Cagra.2471s0020 1.0kb downstream 1.0kb downstream 3324 true Scaffold2471: 68397-71720 Capsella grandiflora
Cagra.2471s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold2471: 70721-71720 Capsella grandiflora
Cagra.2471s0020 2.0kb upstream 2.0kb upstream 4324 true Scaffold2471: 66397-70720 Capsella grandiflora
Cagra.2471s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold2471: 66397-68396 Capsella grandiflora
Cagra.2471s0020 2.0kb downstream 2.0kb downstream 4324 true Scaffold2471: 68397-72720 Capsella grandiflora
Cagra.2471s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold2471: 70721-72720 Capsella grandiflora
Cagra.2471s0020 5.0kb upstream 5.0kb upstream 7324 true Scaffold2471: 63397-70720 Capsella grandiflora
Cagra.2471s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold2471: 63397-68396 Capsella grandiflora
Cagra.2471s0020 5.0kb downstream 5.0kb downstream 7324 true Scaffold2471: 68397-75720 Capsella grandiflora
Cagra.2471s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold2471: 70721-75720 Capsella grandiflora
Cagra.2471s0020 10.0kb upstream 10.0kb upstream 12324 true Scaffold2471: 58397-70720 Capsella grandiflora
Cagra.2471s0020 10.0kb upstream 10.0kb upstream 10000 false Scaffold2471: 58397-68396 Capsella grandiflora
Cagra.2471s0020 10.0kb downstream 10.0kb downstream 12324 true Scaffold2471: 68397-80720 Capsella grandiflora
Cagra.2471s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold2471: 70721-80720 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367760 5261 Brassicaceae View MSA
123834237 5264 Brassicales-Malvales View MSA
124342158 5266 SBM View MSA
124239961 5268 Malvidae View MSA
124065739 5270 Rosid View MSA
123737315 5271 Pentapetalae View MSA
122787755 5272 Eudicot View MSA
122044466 5273 Angiosperm View MSA
121347690 5274 Embryophyte View MSA
123425529 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain