Gene : Cagra.2350s0107 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23416:SF63 - SERINE ACETYLTRANSFERASE 2-RELATED Genomic Order:  107
Name:  ? Cagra.2350s0107 Secondary Identifier:  ? PAC:28908783
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CYSTSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-6936 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2350s0107 0.5kb upstream 0.5kb upstream 2996 true Scaffold2350: 400679-403674 Capsella grandiflora
Cagra.2350s0107 0.5kb upstream 0.5kb upstream 500 false Scaffold2350: 403175-403674 Capsella grandiflora
Cagra.2350s0107 0.5kb downstream 0.5kb downstream 2996 true Scaffold2350: 400179-403174 Capsella grandiflora
Cagra.2350s0107 0.5kb downstream 0.5kb downstream 500 false Scaffold2350: 400179-400678 Capsella grandiflora
Cagra.2350s0107 1.0kb upstream 1.0kb upstream 3496 true Scaffold2350: 400679-404174 Capsella grandiflora
Cagra.2350s0107 1.0kb upstream 1.0kb upstream 1000 false Scaffold2350: 403175-404174 Capsella grandiflora
Cagra.2350s0107 1.0kb downstream 1.0kb downstream 3496 true Scaffold2350: 399679-403174 Capsella grandiflora
Cagra.2350s0107 1.0kb downstream 1.0kb downstream 1000 false Scaffold2350: 399679-400678 Capsella grandiflora
Cagra.2350s0107 2.0kb upstream 2.0kb upstream 4496 true Scaffold2350: 400679-405174 Capsella grandiflora
Cagra.2350s0107 2.0kb upstream 2.0kb upstream 2000 false Scaffold2350: 403175-405174 Capsella grandiflora
Cagra.2350s0107 2.0kb downstream 2.0kb downstream 4496 true Scaffold2350: 398679-403174 Capsella grandiflora
Cagra.2350s0107 2.0kb downstream 2.0kb downstream 2000 false Scaffold2350: 398679-400678 Capsella grandiflora
Cagra.2350s0107 5.0kb upstream 5.0kb upstream 7496 true Scaffold2350: 400679-408174 Capsella grandiflora
Cagra.2350s0107 5.0kb upstream 5.0kb upstream 5000 false Scaffold2350: 403175-408174 Capsella grandiflora
Cagra.2350s0107 5.0kb downstream 5.0kb downstream 7496 true Scaffold2350: 395679-403174 Capsella grandiflora
Cagra.2350s0107 5.0kb downstream 5.0kb downstream 5000 false Scaffold2350: 395679-400678 Capsella grandiflora
Cagra.2350s0107 10.0kb upstream 10.0kb upstream 12496 true Scaffold2350: 400679-413174 Capsella grandiflora
Cagra.2350s0107 10.0kb upstream 10.0kb upstream 10000 false Scaffold2350: 403175-413174 Capsella grandiflora
Cagra.2350s0107 10.0kb downstream 10.0kb downstream 12496 true Scaffold2350: 390679-403174 Capsella grandiflora
Cagra.2350s0107 10.0kb downstream 10.0kb downstream 10000 false Scaffold2350: 390679-400678 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377353 5261 Brassicaceae View MSA
123838527 5264 Brassicales-Malvales View MSA
124322470 5266 SBM View MSA
124240190 5268 Malvidae View MSA
124063279 5270 Rosid View MSA
123743402 5271 Pentapetalae View MSA
122788102 5272 Eudicot View MSA
122045908 5273 Angiosperm View MSA
121349787 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain