Gene : Cagra.2519s0033 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23063:SF2 - PROTEIN ACL-5, ISOFORM A Genomic Order:  33
Name:  ? Cagra.2519s0033 Secondary Identifier:  ? PAC:28903954
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-1319 Capsella grandiflora pathologic  
Cgrandiflora PWY4FS-7 Capsella grandiflora pathologic  
Cgrandiflora PWY-7411 Capsella grandiflora pathologic  
Cgrandiflora TRIGLSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2519s0033 0.5kb upstream 0.5kb upstream 3141 true Scaffold2519: 105138-108278 Capsella grandiflora
Cagra.2519s0033 0.5kb upstream 0.5kb upstream 500 false Scaffold2519: 105138-105637 Capsella grandiflora
Cagra.2519s0033 0.5kb downstream 0.5kb downstream 3141 true Scaffold2519: 105638-108778 Capsella grandiflora
Cagra.2519s0033 0.5kb downstream 0.5kb downstream 500 false Scaffold2519: 108279-108778 Capsella grandiflora
Cagra.2519s0033 1.0kb upstream 1.0kb upstream 3641 true Scaffold2519: 104638-108278 Capsella grandiflora
Cagra.2519s0033 1.0kb upstream 1.0kb upstream 1000 false Scaffold2519: 104638-105637 Capsella grandiflora
Cagra.2519s0033 1.0kb downstream 1.0kb downstream 3641 true Scaffold2519: 105638-109278 Capsella grandiflora
Cagra.2519s0033 1.0kb downstream 1.0kb downstream 1000 false Scaffold2519: 108279-109278 Capsella grandiflora
Cagra.2519s0033 2.0kb upstream 2.0kb upstream 4641 true Scaffold2519: 103638-108278 Capsella grandiflora
Cagra.2519s0033 2.0kb upstream 2.0kb upstream 2000 false Scaffold2519: 103638-105637 Capsella grandiflora
Cagra.2519s0033 2.0kb downstream 2.0kb downstream 4641 true Scaffold2519: 105638-110278 Capsella grandiflora
Cagra.2519s0033 2.0kb downstream 2.0kb downstream 2000 false Scaffold2519: 108279-110278 Capsella grandiflora
Cagra.2519s0033 5.0kb upstream 5.0kb upstream 7641 true Scaffold2519: 100638-108278 Capsella grandiflora
Cagra.2519s0033 5.0kb upstream 5.0kb upstream 5000 false Scaffold2519: 100638-105637 Capsella grandiflora
Cagra.2519s0033 5.0kb downstream 5.0kb downstream 7641 true Scaffold2519: 105638-113278 Capsella grandiflora
Cagra.2519s0033 5.0kb downstream 5.0kb downstream 5000 false Scaffold2519: 108279-113278 Capsella grandiflora
Cagra.2519s0033 10.0kb upstream 10.0kb upstream 12641 true Scaffold2519: 95638-108278 Capsella grandiflora
Cagra.2519s0033 10.0kb upstream 10.0kb upstream 10000 false Scaffold2519: 95638-105637 Capsella grandiflora
Cagra.2519s0033 10.0kb downstream 10.0kb downstream 12641 true Scaffold2519: 105638-118278 Capsella grandiflora
Cagra.2519s0033 10.0kb downstream 10.0kb downstream 10000 false Scaffold2519: 108279-118278 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372849 5261 Brassicaceae View MSA
123831200 5264 Brassicales-Malvales View MSA
124336652 5266 SBM View MSA
124240700 5268 Malvidae View MSA
124065139 5270 Rosid View MSA
123751222 5271 Pentapetalae View MSA
122796143 5272 Eudicot View MSA
122045469 5273 Angiosperm View MSA
121344945 5274 Embryophyte View MSA
123427569 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain