Gene : Cagra.2515s0013 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11709:SF9 - LACCASE-7-RELATED Genomic Order:  13
Name:  ? Cagra.2515s0013 Secondary Identifier:  ? PAC:28894423
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2515s0013 0.5kb upstream 0.5kb upstream 3829 true Scaffold2515: 42864-46692 Capsella grandiflora
Cagra.2515s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold2515: 46193-46692 Capsella grandiflora
Cagra.2515s0013 0.5kb downstream 0.5kb downstream 3829 true Scaffold2515: 42364-46192 Capsella grandiflora
Cagra.2515s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold2515: 42364-42863 Capsella grandiflora
Cagra.2515s0013 1.0kb upstream 1.0kb upstream 4329 true Scaffold2515: 42864-47192 Capsella grandiflora
Cagra.2515s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold2515: 46193-47192 Capsella grandiflora
Cagra.2515s0013 1.0kb downstream 1.0kb downstream 4329 true Scaffold2515: 41864-46192 Capsella grandiflora
Cagra.2515s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold2515: 41864-42863 Capsella grandiflora
Cagra.2515s0013 2.0kb upstream 2.0kb upstream 5329 true Scaffold2515: 42864-48192 Capsella grandiflora
Cagra.2515s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold2515: 46193-48192 Capsella grandiflora
Cagra.2515s0013 2.0kb downstream 2.0kb downstream 5329 true Scaffold2515: 40864-46192 Capsella grandiflora
Cagra.2515s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold2515: 40864-42863 Capsella grandiflora
Cagra.2515s0013 5.0kb upstream 5.0kb upstream 8329 true Scaffold2515: 42864-51192 Capsella grandiflora
Cagra.2515s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold2515: 46193-51192 Capsella grandiflora
Cagra.2515s0013 5.0kb downstream 5.0kb downstream 8329 true Scaffold2515: 37864-46192 Capsella grandiflora
Cagra.2515s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold2515: 37864-42863 Capsella grandiflora
Cagra.2515s0013 10.0kb upstream 10.0kb upstream 13329 true Scaffold2515: 42864-56192 Capsella grandiflora
Cagra.2515s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold2515: 46193-56192 Capsella grandiflora
Cagra.2515s0013 10.0kb downstream 10.0kb downstream 13329 true Scaffold2515: 32864-46192 Capsella grandiflora
Cagra.2515s0013 10.0kb downstream 10.0kb downstream 10000 false Scaffold2515: 32864-42863 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365936 5261 Brassicaceae View MSA
123835955 5264 Brassicales-Malvales View MSA
124351381 5266 SBM View MSA
124241371 5268 Malvidae View MSA
124063010 5270 Rosid View MSA
123744163 5271 Pentapetalae View MSA
122787244 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain