Gene : Cagra.2848s0012 C. grandiflora v1.1
Defline:  (1 of 4) K02942 - large subunit ribosomal protein LP1 (RP-LP1, RPLP1) Genomic Order:  12
Name:  ? Cagra.2848s0012 Secondary Identifier:  ? PAC:28919643
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2848s0012 0.5kb upstream 0.5kb upstream 1617 true Scaffold2848: 40531-42147 Capsella grandiflora
Cagra.2848s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold2848: 41648-42147 Capsella grandiflora
Cagra.2848s0012 0.5kb downstream 0.5kb downstream 1617 true Scaffold2848: 40031-41647 Capsella grandiflora
Cagra.2848s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold2848: 40031-40530 Capsella grandiflora
Cagra.2848s0012 1.0kb upstream 1.0kb upstream 2117 true Scaffold2848: 40531-42647 Capsella grandiflora
Cagra.2848s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold2848: 41648-42647 Capsella grandiflora
Cagra.2848s0012 1.0kb downstream 1.0kb downstream 2117 true Scaffold2848: 39531-41647 Capsella grandiflora
Cagra.2848s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold2848: 39531-40530 Capsella grandiflora
Cagra.2848s0012 2.0kb upstream 2.0kb upstream 3117 true Scaffold2848: 40531-43647 Capsella grandiflora
Cagra.2848s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold2848: 41648-43647 Capsella grandiflora
Cagra.2848s0012 2.0kb downstream 2.0kb downstream 3117 true Scaffold2848: 38531-41647 Capsella grandiflora
Cagra.2848s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold2848: 38531-40530 Capsella grandiflora
Cagra.2848s0012 5.0kb upstream 5.0kb upstream 6117 true Scaffold2848: 40531-46647 Capsella grandiflora
Cagra.2848s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold2848: 41648-46647 Capsella grandiflora
Cagra.2848s0012 5.0kb downstream 5.0kb downstream 6117 true Scaffold2848: 35531-41647 Capsella grandiflora
Cagra.2848s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold2848: 35531-40530 Capsella grandiflora
Cagra.2848s0012 10.0kb upstream 10.0kb upstream 11117 true Scaffold2848: 40531-51647 Capsella grandiflora
Cagra.2848s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold2848: 41648-51647 Capsella grandiflora
Cagra.2848s0012 10.0kb downstream 10.0kb downstream 11117 true Scaffold2848: 30531-41647 Capsella grandiflora
Cagra.2848s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold2848: 30531-40530 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380092 5261 Brassicaceae View MSA
123827526 5264 Brassicales-Malvales View MSA
124343426 5266 SBM View MSA
124243388 5268 Malvidae View MSA
124060612 5270 Rosid View MSA
123738498 5271 Pentapetalae View MSA
122786721 5272 Eudicot View MSA
122041994 5273 Angiosperm View MSA
121347271 5274 Embryophyte View MSA
123424793 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain