Gene : Cagra.2636s0012 C. grandiflora v1.1
Defline:  (1 of 5) PTHR16223:SF29 - TRANSCRIPTION FACTOR BHLH117-RELATED Genomic Order:  12
Name:  ? Cagra.2636s0012 Secondary Identifier:  ? PAC:28904990
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2636s0012 0.5kb upstream 0.5kb upstream 2802 true Scaffold2636: 34090-36891 Capsella grandiflora
Cagra.2636s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold2636: 36392-36891 Capsella grandiflora
Cagra.2636s0012 0.5kb downstream 0.5kb downstream 2802 true Scaffold2636: 33590-36391 Capsella grandiflora
Cagra.2636s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold2636: 33590-34089 Capsella grandiflora
Cagra.2636s0012 1.0kb upstream 1.0kb upstream 3302 true Scaffold2636: 34090-37391 Capsella grandiflora
Cagra.2636s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold2636: 36392-37391 Capsella grandiflora
Cagra.2636s0012 1.0kb downstream 1.0kb downstream 3302 true Scaffold2636: 33090-36391 Capsella grandiflora
Cagra.2636s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold2636: 33090-34089 Capsella grandiflora
Cagra.2636s0012 2.0kb upstream 2.0kb upstream 4302 true Scaffold2636: 34090-38391 Capsella grandiflora
Cagra.2636s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold2636: 36392-38391 Capsella grandiflora
Cagra.2636s0012 2.0kb downstream 2.0kb downstream 4302 true Scaffold2636: 32090-36391 Capsella grandiflora
Cagra.2636s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold2636: 32090-34089 Capsella grandiflora
Cagra.2636s0012 5.0kb upstream 5.0kb upstream 7302 true Scaffold2636: 34090-41391 Capsella grandiflora
Cagra.2636s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold2636: 36392-41391 Capsella grandiflora
Cagra.2636s0012 5.0kb downstream 5.0kb downstream 7302 true Scaffold2636: 29090-36391 Capsella grandiflora
Cagra.2636s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold2636: 29090-34089 Capsella grandiflora
Cagra.2636s0012 10.0kb upstream 10.0kb upstream 12302 true Scaffold2636: 34090-46391 Capsella grandiflora
Cagra.2636s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold2636: 36392-46391 Capsella grandiflora
Cagra.2636s0012 10.0kb downstream 10.0kb downstream 12302 true Scaffold2636: 24090-36391 Capsella grandiflora
Cagra.2636s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold2636: 24090-34089 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367386 5261 Brassicaceae View MSA
123835699 5264 Brassicales-Malvales View MSA
124340682 5266 SBM View MSA
124252868 5268 Malvidae View MSA
124073794 5270 Rosid View MSA
123751595 5271 Pentapetalae View MSA
122793357 5272 Eudicot View MSA
122051356 5273 Angiosperm View MSA
121349754 5274 Embryophyte View MSA
123381429 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain