Gene : Cagra.2552s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR15657:SF1 - THYROID TRANSCRIPTION FACTOR 1-ASSOCIATED PROTEIN 26 Genomic Order:  10
Name:  ? Cagra.2552s0010 Secondary Identifier:  ? PAC:28895081
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.2552s0010 0.5kb upstream 0.5kb upstream 1775 true Scaffold2552: 31139-32913 Capsella grandiflora
Cagra.2552s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold2552: 32414-32913 Capsella grandiflora
Cagra.2552s0010 0.5kb downstream 0.5kb downstream 1775 true Scaffold2552: 30639-32413 Capsella grandiflora
Cagra.2552s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold2552: 30639-31138 Capsella grandiflora
Cagra.2552s0010 1.0kb upstream 1.0kb upstream 2275 true Scaffold2552: 31139-33413 Capsella grandiflora
Cagra.2552s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold2552: 32414-33413 Capsella grandiflora
Cagra.2552s0010 1.0kb downstream 1.0kb downstream 2275 true Scaffold2552: 30139-32413 Capsella grandiflora
Cagra.2552s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold2552: 30139-31138 Capsella grandiflora
Cagra.2552s0010 2.0kb upstream 2.0kb upstream 3275 true Scaffold2552: 31139-34413 Capsella grandiflora
Cagra.2552s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold2552: 32414-34413 Capsella grandiflora
Cagra.2552s0010 2.0kb downstream 2.0kb downstream 3275 true Scaffold2552: 29139-32413 Capsella grandiflora
Cagra.2552s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold2552: 29139-31138 Capsella grandiflora
Cagra.2552s0010 5.0kb upstream 5.0kb upstream 6275 true Scaffold2552: 31139-37413 Capsella grandiflora
Cagra.2552s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold2552: 32414-37413 Capsella grandiflora
Cagra.2552s0010 5.0kb downstream 5.0kb downstream 6275 true Scaffold2552: 26139-32413 Capsella grandiflora
Cagra.2552s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold2552: 26139-31138 Capsella grandiflora
Cagra.2552s0010 10.0kb upstream 10.0kb upstream 11275 true Scaffold2552: 31139-42413 Capsella grandiflora
Cagra.2552s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold2552: 32414-42413 Capsella grandiflora
Cagra.2552s0010 10.0kb downstream 10.0kb downstream 11275 true Scaffold2552: 21139-32413 Capsella grandiflora
Cagra.2552s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold2552: 21139-31138 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371726 5261 Brassicaceae View MSA
123835051 5264 Brassicales-Malvales View MSA
124344375 5266 SBM View MSA
124248791 5268 Malvidae View MSA
124065929 5270 Rosid View MSA
123736421 5271 Pentapetalae View MSA
122791858 5272 Eudicot View MSA
122042448 5273 Angiosperm View MSA
121343985 5274 Embryophyte View MSA
123426667 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain