Gene : Cagra.3373s0039 C. grandiflora v1.1
Defline:  (1 of 17) PF00046//PF01852 - Homeobox domain (Homeobox) // START domain (START) Genomic Order:  39
Name:  ? Cagra.3373s0039 Secondary Identifier:  ? PAC:28894171
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3373s0039 0.5kb upstream 0.5kb upstream 5176 true Scaffold3373: 127145-132320 Capsella grandiflora
Cagra.3373s0039 0.5kb upstream 0.5kb upstream 500 false Scaffold3373: 131821-132320 Capsella grandiflora
Cagra.3373s0039 0.5kb downstream 0.5kb downstream 5176 true Scaffold3373: 126645-131820 Capsella grandiflora
Cagra.3373s0039 0.5kb downstream 0.5kb downstream 500 false Scaffold3373: 126645-127144 Capsella grandiflora
Cagra.3373s0039 1.0kb upstream 1.0kb upstream 5676 true Scaffold3373: 127145-132820 Capsella grandiflora
Cagra.3373s0039 1.0kb upstream 1.0kb upstream 1000 false Scaffold3373: 131821-132820 Capsella grandiflora
Cagra.3373s0039 1.0kb downstream 1.0kb downstream 5676 true Scaffold3373: 126145-131820 Capsella grandiflora
Cagra.3373s0039 1.0kb downstream 1.0kb downstream 1000 false Scaffold3373: 126145-127144 Capsella grandiflora
Cagra.3373s0039 2.0kb upstream 2.0kb upstream 6676 true Scaffold3373: 127145-133820 Capsella grandiflora
Cagra.3373s0039 2.0kb upstream 2.0kb upstream 2000 false Scaffold3373: 131821-133820 Capsella grandiflora
Cagra.3373s0039 2.0kb downstream 2.0kb downstream 6676 true Scaffold3373: 125145-131820 Capsella grandiflora
Cagra.3373s0039 2.0kb downstream 2.0kb downstream 2000 false Scaffold3373: 125145-127144 Capsella grandiflora
Cagra.3373s0039 5.0kb upstream 5.0kb upstream 9676 true Scaffold3373: 127145-136820 Capsella grandiflora
Cagra.3373s0039 5.0kb upstream 5.0kb upstream 5000 false Scaffold3373: 131821-136820 Capsella grandiflora
Cagra.3373s0039 5.0kb downstream 5.0kb downstream 9676 true Scaffold3373: 122145-131820 Capsella grandiflora
Cagra.3373s0039 5.0kb downstream 5.0kb downstream 5000 false Scaffold3373: 122145-127144 Capsella grandiflora
Cagra.3373s0039 10.0kb upstream 10.0kb upstream 14676 true Scaffold3373: 127145-141820 Capsella grandiflora
Cagra.3373s0039 10.0kb upstream 10.0kb upstream 10000 false Scaffold3373: 131821-141820 Capsella grandiflora
Cagra.3373s0039 10.0kb downstream 10.0kb downstream 14676 true Scaffold3373: 117145-131820 Capsella grandiflora
Cagra.3373s0039 10.0kb downstream 10.0kb downstream 10000 false Scaffold3373: 117145-127144 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371211 5261 Brassicaceae View MSA
123800125 5264 Brassicales-Malvales View MSA
124297574 5266 SBM View MSA
124149426 5268 Malvidae View MSA
124063291 5270 Rosid View MSA
123740352 5271 Pentapetalae View MSA
122790073 5272 Eudicot View MSA
122048483 5273 Angiosperm View MSA
121350910 5274 Embryophyte View MSA
123381934 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain