Gene : Cagra.3388s0003 C. grandiflora v1.1
Defline:  (1 of 1) PF00443//PF06337//PF13423 - Ubiquitin carboxyl-terminal hydrolase (UCH) // DUSP domain (DUSP) // Ubiquitin carboxyl-terminal hydrolase (UCH_1) Genomic Order:  3
Name:  ? Cagra.3388s0003 Secondary Identifier:  ? PAC:28919483
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3388s0003 0.5kb upstream 0.5kb upstream 10895 true Scaffold3388: 7641-18535 Capsella grandiflora
Cagra.3388s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3388: 7641-8140 Capsella grandiflora
Cagra.3388s0003 0.5kb downstream 0.5kb downstream 10895 true Scaffold3388: 8141-19035 Capsella grandiflora
Cagra.3388s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3388: 18536-19035 Capsella grandiflora
Cagra.3388s0003 1.0kb upstream 1.0kb upstream 11395 true Scaffold3388: 7141-18535 Capsella grandiflora
Cagra.3388s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3388: 7141-8140 Capsella grandiflora
Cagra.3388s0003 1.0kb downstream 1.0kb downstream 11395 true Scaffold3388: 8141-19535 Capsella grandiflora
Cagra.3388s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3388: 18536-19535 Capsella grandiflora
Cagra.3388s0003 2.0kb upstream 2.0kb upstream 12395 true Scaffold3388: 6141-18535 Capsella grandiflora
Cagra.3388s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3388: 6141-8140 Capsella grandiflora
Cagra.3388s0003 2.0kb downstream 2.0kb downstream 12395 true Scaffold3388: 8141-20535 Capsella grandiflora
Cagra.3388s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold3388: 18536-20535 Capsella grandiflora
Cagra.3388s0003 5.0kb upstream 5.0kb upstream 15395 true Scaffold3388: 3141-18535 Capsella grandiflora
Cagra.3388s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold3388: 3141-8140 Capsella grandiflora
Cagra.3388s0003 5.0kb downstream 5.0kb downstream 15395 true Scaffold3388: 8141-23535 Capsella grandiflora
Cagra.3388s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold3388: 18536-23535 Capsella grandiflora
Cagra.3388s0003 10.0kb upstream 10.0kb upstream 18535 true Scaffold3388: 1-18535 Capsella grandiflora
Cagra.3388s0003 10.0kb upstream 10.0kb upstream 8140 false Scaffold3388: 1-8140 Capsella grandiflora
Cagra.3388s0003 10.0kb downstream 10.0kb downstream 20395 true Scaffold3388: 8141-28535 Capsella grandiflora
Cagra.3388s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold3388: 18536-28535 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333550 5261 Brassicaceae Singleton cluster - no MSA
123774484 5264 Brassicales-Malvales Singleton cluster - no MSA
124272920 5266 SBM Singleton cluster - no MSA
124249814 5268 Malvidae View MSA
124063277 5270 Rosid View MSA
123740103 5271 Pentapetalae View MSA
122793775 5272 Eudicot View MSA
122043130 5273 Angiosperm View MSA
121310077 5274 Embryophyte View MSA
123426305 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain