Gene : Cagra.3366s0017 C. grandiflora v1.1
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  17
Name:  ? Cagra.3366s0017 Secondary Identifier:  ? PAC:28915142
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7560 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3366s0017 0.5kb upstream 0.5kb upstream 4111 true Scaffold3366: 54863-58973 Capsella grandiflora
Cagra.3366s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold3366: 58474-58973 Capsella grandiflora
Cagra.3366s0017 0.5kb downstream 0.5kb downstream 4111 true Scaffold3366: 54363-58473 Capsella grandiflora
Cagra.3366s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold3366: 54363-54862 Capsella grandiflora
Cagra.3366s0017 1.0kb upstream 1.0kb upstream 4611 true Scaffold3366: 54863-59473 Capsella grandiflora
Cagra.3366s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold3366: 58474-59473 Capsella grandiflora
Cagra.3366s0017 1.0kb downstream 1.0kb downstream 4611 true Scaffold3366: 53863-58473 Capsella grandiflora
Cagra.3366s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold3366: 53863-54862 Capsella grandiflora
Cagra.3366s0017 2.0kb upstream 2.0kb upstream 5611 true Scaffold3366: 54863-60473 Capsella grandiflora
Cagra.3366s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold3366: 58474-60473 Capsella grandiflora
Cagra.3366s0017 2.0kb downstream 2.0kb downstream 5611 true Scaffold3366: 52863-58473 Capsella grandiflora
Cagra.3366s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold3366: 52863-54862 Capsella grandiflora
Cagra.3366s0017 5.0kb upstream 5.0kb upstream 8611 true Scaffold3366: 54863-63473 Capsella grandiflora
Cagra.3366s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold3366: 58474-63473 Capsella grandiflora
Cagra.3366s0017 5.0kb downstream 5.0kb downstream 8611 true Scaffold3366: 49863-58473 Capsella grandiflora
Cagra.3366s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold3366: 49863-54862 Capsella grandiflora
Cagra.3366s0017 10.0kb upstream 10.0kb upstream 13611 true Scaffold3366: 54863-68473 Capsella grandiflora
Cagra.3366s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold3366: 58474-68473 Capsella grandiflora
Cagra.3366s0017 10.0kb downstream 10.0kb downstream 13611 true Scaffold3366: 44863-58473 Capsella grandiflora
Cagra.3366s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold3366: 44863-54862 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369320 5261 Brassicaceae View MSA
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain