Gene : Cagra.3132s0019 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22603:SF41 - CHOLINE KINASE 2-RELATED Genomic Order:  19
Name:  ? Cagra.3132s0019 Secondary Identifier:  ? PAC:28904876
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3385 Capsella grandiflora pathologic  
Cgrandiflora PWY4FS-6 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3132s0019 0.5kb upstream 0.5kb upstream 2878 true Scaffold3132: 58616-61493 Capsella grandiflora
Cagra.3132s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold3132: 58616-59115 Capsella grandiflora
Cagra.3132s0019 0.5kb downstream 0.5kb downstream 2878 true Scaffold3132: 59116-61993 Capsella grandiflora
Cagra.3132s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold3132: 61494-61993 Capsella grandiflora
Cagra.3132s0019 1.0kb upstream 1.0kb upstream 3378 true Scaffold3132: 58116-61493 Capsella grandiflora
Cagra.3132s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold3132: 58116-59115 Capsella grandiflora
Cagra.3132s0019 1.0kb downstream 1.0kb downstream 3378 true Scaffold3132: 59116-62493 Capsella grandiflora
Cagra.3132s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold3132: 61494-62493 Capsella grandiflora
Cagra.3132s0019 2.0kb upstream 2.0kb upstream 4378 true Scaffold3132: 57116-61493 Capsella grandiflora
Cagra.3132s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold3132: 57116-59115 Capsella grandiflora
Cagra.3132s0019 2.0kb downstream 2.0kb downstream 4378 true Scaffold3132: 59116-63493 Capsella grandiflora
Cagra.3132s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold3132: 61494-63493 Capsella grandiflora
Cagra.3132s0019 5.0kb upstream 5.0kb upstream 7378 true Scaffold3132: 54116-61493 Capsella grandiflora
Cagra.3132s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold3132: 54116-59115 Capsella grandiflora
Cagra.3132s0019 5.0kb downstream 5.0kb downstream 7378 true Scaffold3132: 59116-66493 Capsella grandiflora
Cagra.3132s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold3132: 61494-66493 Capsella grandiflora
Cagra.3132s0019 10.0kb upstream 10.0kb upstream 12378 true Scaffold3132: 49116-61493 Capsella grandiflora
Cagra.3132s0019 10.0kb upstream 10.0kb upstream 10000 false Scaffold3132: 49116-59115 Capsella grandiflora
Cagra.3132s0019 10.0kb downstream 10.0kb downstream 12378 true Scaffold3132: 59116-71493 Capsella grandiflora
Cagra.3132s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold3132: 61494-71493 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373896 5261 Brassicaceae View MSA
123830866 5264 Brassicales-Malvales View MSA
124346062 5266 SBM View MSA
124248672 5268 Malvidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain