Gene : Cagra.3086s0001 C. grandiflora v1.1
Defline:  (1 of 3) 1.1.1.42 - Isocitrate dehydrogenase (NADP(+)) / oxalosuccinate carboxylase Genomic Order:  1
Name:  ? Cagra.3086s0001 Secondary Identifier:  ? PAC:28894946
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3086s0001 0.5kb upstream 0.5kb upstream 3348 true Scaffold3086: 1-3348 Capsella grandiflora
Cagra.3086s0001 0.5kb upstream 0.5kb upstream 77 false Scaffold3086: 1-77 Capsella grandiflora
Cagra.3086s0001 0.5kb downstream 0.5kb downstream 3771 true Scaffold3086: 78-3848 Capsella grandiflora
Cagra.3086s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3086: 3349-3848 Capsella grandiflora
Cagra.3086s0001 1.0kb upstream 1.0kb upstream 3348 true Scaffold3086: 1-3348 Capsella grandiflora
Cagra.3086s0001 1.0kb upstream 1.0kb upstream 77 false Scaffold3086: 1-77 Capsella grandiflora
Cagra.3086s0001 1.0kb downstream 1.0kb downstream 4271 true Scaffold3086: 78-4348 Capsella grandiflora
Cagra.3086s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3086: 3349-4348 Capsella grandiflora
Cagra.3086s0001 2.0kb upstream 2.0kb upstream 3348 true Scaffold3086: 1-3348 Capsella grandiflora
Cagra.3086s0001 2.0kb upstream 2.0kb upstream 77 false Scaffold3086: 1-77 Capsella grandiflora
Cagra.3086s0001 2.0kb downstream 2.0kb downstream 5271 true Scaffold3086: 78-5348 Capsella grandiflora
Cagra.3086s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3086: 3349-5348 Capsella grandiflora
Cagra.3086s0001 5.0kb upstream 5.0kb upstream 3348 true Scaffold3086: 1-3348 Capsella grandiflora
Cagra.3086s0001 5.0kb upstream 5.0kb upstream 77 false Scaffold3086: 1-77 Capsella grandiflora
Cagra.3086s0001 5.0kb downstream 5.0kb downstream 8271 true Scaffold3086: 78-8348 Capsella grandiflora
Cagra.3086s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3086: 3349-8348 Capsella grandiflora
Cagra.3086s0001 10.0kb upstream 10.0kb upstream 3348 true Scaffold3086: 1-3348 Capsella grandiflora
Cagra.3086s0001 10.0kb upstream 10.0kb upstream 77 false Scaffold3086: 1-77 Capsella grandiflora
Cagra.3086s0001 10.0kb downstream 10.0kb downstream 13271 true Scaffold3086: 78-13348 Capsella grandiflora
Cagra.3086s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold3086: 3349-13348 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375650 5261 Brassicaceae View MSA
123836810 5264 Brassicales-Malvales View MSA
124343936 5266 SBM View MSA
124253615 5268 Malvidae View MSA
124070230 5270 Rosid View MSA
123744673 5271 Pentapetalae View MSA
122792686 5272 Eudicot View MSA
122045414 5273 Angiosperm View MSA
121351363 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain