Gene : Cagra.3125s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR23088:SF26 - N-CARBAMOYLPUTRESCINE AMIDASE Genomic Order:  1
Name:  ? Cagra.3125s0001 Secondary Identifier:  ? PAC:28919493
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-43 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3125s0001 0.5kb upstream 0.5kb upstream 2101 true Scaffold3125: 2513-4613 Capsella grandiflora
Cagra.3125s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold3125: 2513-3012 Capsella grandiflora
Cagra.3125s0001 0.5kb downstream 0.5kb downstream 2101 true Scaffold3125: 3013-5113 Capsella grandiflora
Cagra.3125s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold3125: 4614-5113 Capsella grandiflora
Cagra.3125s0001 1.0kb upstream 1.0kb upstream 2601 true Scaffold3125: 2013-4613 Capsella grandiflora
Cagra.3125s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold3125: 2013-3012 Capsella grandiflora
Cagra.3125s0001 1.0kb downstream 1.0kb downstream 2601 true Scaffold3125: 3013-5613 Capsella grandiflora
Cagra.3125s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold3125: 4614-5613 Capsella grandiflora
Cagra.3125s0001 2.0kb upstream 2.0kb upstream 3601 true Scaffold3125: 1013-4613 Capsella grandiflora
Cagra.3125s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold3125: 1013-3012 Capsella grandiflora
Cagra.3125s0001 2.0kb downstream 2.0kb downstream 3601 true Scaffold3125: 3013-6613 Capsella grandiflora
Cagra.3125s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold3125: 4614-6613 Capsella grandiflora
Cagra.3125s0001 5.0kb upstream 5.0kb upstream 4613 true Scaffold3125: 1-4613 Capsella grandiflora
Cagra.3125s0001 5.0kb upstream 5.0kb upstream 3012 false Scaffold3125: 1-3012 Capsella grandiflora
Cagra.3125s0001 5.0kb downstream 5.0kb downstream 6601 true Scaffold3125: 3013-9613 Capsella grandiflora
Cagra.3125s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold3125: 4614-9613 Capsella grandiflora
Cagra.3125s0001 10.0kb upstream 10.0kb upstream 4613 true Scaffold3125: 1-4613 Capsella grandiflora
Cagra.3125s0001 10.0kb upstream 10.0kb upstream 3012 false Scaffold3125: 1-3012 Capsella grandiflora
Cagra.3125s0001 10.0kb downstream 10.0kb downstream 11601 true Scaffold3125: 3013-14613 Capsella grandiflora
Cagra.3125s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold3125: 4614-14613 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122333487 5261 Brassicaceae Singleton cluster - no MSA
123838121 5264 Brassicales-Malvales View MSA
124345212 5266 SBM View MSA
124242710 5268 Malvidae View MSA
124064750 5270 Rosid View MSA
123740883 5271 Pentapetalae View MSA
122790210 5272 Eudicot View MSA
122048045 5273 Angiosperm View MSA
121345187 5274 Embryophyte View MSA
123425412 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain