Gene : Cagra.3542s0013 C. grandiflora v1.1
Defline:  (1 of 2) 2.5.1.75 - tRNA dimethylallyltransferase / tRNA prenyltransferase Genomic Order:  13
Name:  ? Cagra.3542s0013 Secondary Identifier:  ? PAC:28914526
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-2781 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3542s0013 0.5kb upstream 0.5kb upstream 4033 true Scaffold3542: 31140-35172 Capsella grandiflora
Cagra.3542s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold3542: 31140-31639 Capsella grandiflora
Cagra.3542s0013 0.5kb downstream 0.5kb downstream 4033 true Scaffold3542: 31640-35672 Capsella grandiflora
Cagra.3542s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold3542: 35173-35672 Capsella grandiflora
Cagra.3542s0013 1.0kb upstream 1.0kb upstream 4533 true Scaffold3542: 30640-35172 Capsella grandiflora
Cagra.3542s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold3542: 30640-31639 Capsella grandiflora
Cagra.3542s0013 1.0kb downstream 1.0kb downstream 4533 true Scaffold3542: 31640-36172 Capsella grandiflora
Cagra.3542s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold3542: 35173-36172 Capsella grandiflora
Cagra.3542s0013 2.0kb upstream 2.0kb upstream 5533 true Scaffold3542: 29640-35172 Capsella grandiflora
Cagra.3542s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold3542: 29640-31639 Capsella grandiflora
Cagra.3542s0013 2.0kb downstream 2.0kb downstream 5533 true Scaffold3542: 31640-37172 Capsella grandiflora
Cagra.3542s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold3542: 35173-37172 Capsella grandiflora
Cagra.3542s0013 5.0kb upstream 5.0kb upstream 8533 true Scaffold3542: 26640-35172 Capsella grandiflora
Cagra.3542s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold3542: 26640-31639 Capsella grandiflora
Cagra.3542s0013 5.0kb downstream 5.0kb downstream 8533 true Scaffold3542: 31640-40172 Capsella grandiflora
Cagra.3542s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold3542: 35173-40172 Capsella grandiflora
Cagra.3542s0013 10.0kb upstream 10.0kb upstream 13533 true Scaffold3542: 21640-35172 Capsella grandiflora
Cagra.3542s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold3542: 21640-31639 Capsella grandiflora
Cagra.3542s0013 10.0kb downstream 10.0kb downstream 9571 true Scaffold3542: 31640-41210 Capsella grandiflora
Cagra.3542s0013 10.0kb downstream 10.0kb downstream 6038 false Scaffold3542: 35173-41210 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377436 5261 Brassicaceae View MSA
123831177 5264 Brassicales-Malvales View MSA
124343005 5266 SBM View MSA
124240666 5268 Malvidae View MSA
124066214 5270 Rosid View MSA
123738978 5271 Pentapetalae View MSA
122792264 5272 Eudicot View MSA
122047791 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain