Gene : Cagra.3542s0010 C. grandiflora v1.1
Defline:  (1 of 3) PTHR10655//PTHR10655:SF34 - LYSOPHOSPHOLIPASE-RELATED Genomic Order:  10
Name:  ? Cagra.3542s0010 Secondary Identifier:  ? PAC:28914530
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3542s0010 0.5kb upstream 0.5kb upstream 3362 true Scaffold3542: 23863-27224 Capsella grandiflora
Cagra.3542s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold3542: 26725-27224 Capsella grandiflora
Cagra.3542s0010 0.5kb downstream 0.5kb downstream 3362 true Scaffold3542: 23363-26724 Capsella grandiflora
Cagra.3542s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold3542: 23363-23862 Capsella grandiflora
Cagra.3542s0010 1.0kb upstream 1.0kb upstream 3862 true Scaffold3542: 23863-27724 Capsella grandiflora
Cagra.3542s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold3542: 26725-27724 Capsella grandiflora
Cagra.3542s0010 1.0kb downstream 1.0kb downstream 3862 true Scaffold3542: 22863-26724 Capsella grandiflora
Cagra.3542s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold3542: 22863-23862 Capsella grandiflora
Cagra.3542s0010 2.0kb upstream 2.0kb upstream 4862 true Scaffold3542: 23863-28724 Capsella grandiflora
Cagra.3542s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold3542: 26725-28724 Capsella grandiflora
Cagra.3542s0010 2.0kb downstream 2.0kb downstream 4862 true Scaffold3542: 21863-26724 Capsella grandiflora
Cagra.3542s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold3542: 21863-23862 Capsella grandiflora
Cagra.3542s0010 5.0kb upstream 5.0kb upstream 7862 true Scaffold3542: 23863-31724 Capsella grandiflora
Cagra.3542s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold3542: 26725-31724 Capsella grandiflora
Cagra.3542s0010 5.0kb downstream 5.0kb downstream 7862 true Scaffold3542: 18863-26724 Capsella grandiflora
Cagra.3542s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold3542: 18863-23862 Capsella grandiflora
Cagra.3542s0010 10.0kb upstream 10.0kb upstream 12862 true Scaffold3542: 23863-36724 Capsella grandiflora
Cagra.3542s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold3542: 26725-36724 Capsella grandiflora
Cagra.3542s0010 10.0kb downstream 10.0kb downstream 12862 true Scaffold3542: 13863-26724 Capsella grandiflora
Cagra.3542s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold3542: 13863-23862 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377589 5261 Brassicaceae View MSA
123835290 5264 Brassicales-Malvales View MSA
124348957 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain