Gene : Cagra.3542s0009 C. grandiflora v1.1
Defline:  (1 of 1) PTHR22769:SF7 - PEROXISOMAL NADH PYROPHOSPHATASE NUDT12 Genomic Order:  9
Name:  ? Cagra.3542s0009 Secondary Identifier:  ? PAC:28914518
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5381 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3542s0009 0.5kb upstream 0.5kb upstream 3126 true Scaffold3542: 21025-24150 Capsella grandiflora
Cagra.3542s0009 0.5kb upstream 0.5kb upstream 500 false Scaffold3542: 23651-24150 Capsella grandiflora
Cagra.3542s0009 0.5kb downstream 0.5kb downstream 3126 true Scaffold3542: 20525-23650 Capsella grandiflora
Cagra.3542s0009 0.5kb downstream 0.5kb downstream 500 false Scaffold3542: 20525-21024 Capsella grandiflora
Cagra.3542s0009 1.0kb upstream 1.0kb upstream 3626 true Scaffold3542: 21025-24650 Capsella grandiflora
Cagra.3542s0009 1.0kb upstream 1.0kb upstream 1000 false Scaffold3542: 23651-24650 Capsella grandiflora
Cagra.3542s0009 1.0kb downstream 1.0kb downstream 3626 true Scaffold3542: 20025-23650 Capsella grandiflora
Cagra.3542s0009 1.0kb downstream 1.0kb downstream 1000 false Scaffold3542: 20025-21024 Capsella grandiflora
Cagra.3542s0009 2.0kb upstream 2.0kb upstream 4626 true Scaffold3542: 21025-25650 Capsella grandiflora
Cagra.3542s0009 2.0kb upstream 2.0kb upstream 2000 false Scaffold3542: 23651-25650 Capsella grandiflora
Cagra.3542s0009 2.0kb downstream 2.0kb downstream 4626 true Scaffold3542: 19025-23650 Capsella grandiflora
Cagra.3542s0009 2.0kb downstream 2.0kb downstream 2000 false Scaffold3542: 19025-21024 Capsella grandiflora
Cagra.3542s0009 5.0kb upstream 5.0kb upstream 7626 true Scaffold3542: 21025-28650 Capsella grandiflora
Cagra.3542s0009 5.0kb upstream 5.0kb upstream 5000 false Scaffold3542: 23651-28650 Capsella grandiflora
Cagra.3542s0009 5.0kb downstream 5.0kb downstream 7626 true Scaffold3542: 16025-23650 Capsella grandiflora
Cagra.3542s0009 5.0kb downstream 5.0kb downstream 5000 false Scaffold3542: 16025-21024 Capsella grandiflora
Cagra.3542s0009 10.0kb upstream 10.0kb upstream 12626 true Scaffold3542: 21025-33650 Capsella grandiflora
Cagra.3542s0009 10.0kb upstream 10.0kb upstream 10000 false Scaffold3542: 23651-33650 Capsella grandiflora
Cagra.3542s0009 10.0kb downstream 10.0kb downstream 12626 true Scaffold3542: 11025-23650 Capsella grandiflora
Cagra.3542s0009 10.0kb downstream 10.0kb downstream 10000 false Scaffold3542: 11025-21024 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370548 5261 Brassicaceae View MSA
123834186 5264 Brassicales-Malvales View MSA
124350331 5266 SBM View MSA
124243566 5268 Malvidae View MSA
124065402 5270 Rosid View MSA
123742146 5271 Pentapetalae View MSA
122787569 5272 Eudicot View MSA
122041659 5273 Angiosperm View MSA
121345450 5274 Embryophyte View MSA
123427123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain