Gene : Cagra.3598s0003 C. grandiflora v1.1
Defline:  (1 of 1) PTHR18934//PTHR18934:SF120 - ATP-DEPENDENT RNA HELICASE Genomic Order:  3
Name:  ? Cagra.3598s0003 Secondary Identifier:  ? PAC:28906427
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3598s0003 0.5kb upstream 0.5kb upstream 4041 true Scaffold3598: 8296-12336 Capsella grandiflora
Cagra.3598s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold3598: 11837-12336 Capsella grandiflora
Cagra.3598s0003 0.5kb downstream 0.5kb downstream 4041 true Scaffold3598: 7796-11836 Capsella grandiflora
Cagra.3598s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold3598: 7796-8295 Capsella grandiflora
Cagra.3598s0003 1.0kb upstream 1.0kb upstream 4541 true Scaffold3598: 8296-12836 Capsella grandiflora
Cagra.3598s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold3598: 11837-12836 Capsella grandiflora
Cagra.3598s0003 1.0kb downstream 1.0kb downstream 4541 true Scaffold3598: 7296-11836 Capsella grandiflora
Cagra.3598s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold3598: 7296-8295 Capsella grandiflora
Cagra.3598s0003 2.0kb upstream 2.0kb upstream 5541 true Scaffold3598: 8296-13836 Capsella grandiflora
Cagra.3598s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold3598: 11837-13836 Capsella grandiflora
Cagra.3598s0003 2.0kb downstream 2.0kb downstream 5541 true Scaffold3598: 6296-11836 Capsella grandiflora
Cagra.3598s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold3598: 6296-8295 Capsella grandiflora
Cagra.3598s0003 5.0kb upstream 5.0kb upstream 8541 true Scaffold3598: 8296-16836 Capsella grandiflora
Cagra.3598s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold3598: 11837-16836 Capsella grandiflora
Cagra.3598s0003 5.0kb downstream 5.0kb downstream 8541 true Scaffold3598: 3296-11836 Capsella grandiflora
Cagra.3598s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold3598: 3296-8295 Capsella grandiflora
Cagra.3598s0003 10.0kb upstream 10.0kb upstream 13541 true Scaffold3598: 8296-21836 Capsella grandiflora
Cagra.3598s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold3598: 11837-21836 Capsella grandiflora
Cagra.3598s0003 10.0kb downstream 10.0kb downstream 11836 true Scaffold3598: 1-11836 Capsella grandiflora
Cagra.3598s0003 10.0kb downstream 10.0kb downstream 8295 false Scaffold3598: 1-8295 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343216 5261 Brassicaceae View MSA
123838547 5264 Brassicales-Malvales View MSA
124345704 5266 SBM View MSA
124252464 5268 Malvidae View MSA
124065617 5270 Rosid View MSA
123749585 5271 Pentapetalae View MSA
122791616 5272 Eudicot View MSA
122047239 5273 Angiosperm View MSA
121347045 5274 Embryophyte View MSA
123427564 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain