Gene : Cagra.3528s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11514:SF53 - TRANSCRIPTION FACTOR BHLH3 Genomic Order:  2
Name:  ? Cagra.3528s0002 Secondary Identifier:  ? PAC:28906448
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3528s0002 0.5kb upstream 0.5kb upstream 2334 true Scaffold3528: 1209-3542 Capsella grandiflora
Cagra.3528s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold3528: 3043-3542 Capsella grandiflora
Cagra.3528s0002 0.5kb downstream 0.5kb downstream 2334 true Scaffold3528: 709-3042 Capsella grandiflora
Cagra.3528s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold3528: 709-1208 Capsella grandiflora
Cagra.3528s0002 1.0kb upstream 1.0kb upstream 2834 true Scaffold3528: 1209-4042 Capsella grandiflora
Cagra.3528s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold3528: 3043-4042 Capsella grandiflora
Cagra.3528s0002 1.0kb downstream 1.0kb downstream 2834 true Scaffold3528: 209-3042 Capsella grandiflora
Cagra.3528s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold3528: 209-1208 Capsella grandiflora
Cagra.3528s0002 2.0kb upstream 2.0kb upstream 3834 true Scaffold3528: 1209-5042 Capsella grandiflora
Cagra.3528s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold3528: 3043-5042 Capsella grandiflora
Cagra.3528s0002 2.0kb downstream 2.0kb downstream 3042 true Scaffold3528: 1-3042 Capsella grandiflora
Cagra.3528s0002 2.0kb downstream 2.0kb downstream 1208 false Scaffold3528: 1-1208 Capsella grandiflora
Cagra.3528s0002 5.0kb upstream 5.0kb upstream 6834 true Scaffold3528: 1209-8042 Capsella grandiflora
Cagra.3528s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold3528: 3043-8042 Capsella grandiflora
Cagra.3528s0002 5.0kb downstream 5.0kb downstream 3042 true Scaffold3528: 1-3042 Capsella grandiflora
Cagra.3528s0002 5.0kb downstream 5.0kb downstream 1208 false Scaffold3528: 1-1208 Capsella grandiflora
Cagra.3528s0002 10.0kb upstream 10.0kb upstream 11834 true Scaffold3528: 1209-13042 Capsella grandiflora
Cagra.3528s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold3528: 3043-13042 Capsella grandiflora
Cagra.3528s0002 10.0kb downstream 10.0kb downstream 3042 true Scaffold3528: 1-3042 Capsella grandiflora
Cagra.3528s0002 10.0kb downstream 10.0kb downstream 1208 false Scaffold3528: 1-1208 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373951 5261 Brassicaceae View MSA
123835989 5264 Brassicales-Malvales View MSA
124349492 5266 SBM View MSA
124241968 5268 Malvidae View MSA
124062097 5270 Rosid View MSA
123736718 5271 Pentapetalae View MSA
122790494 5272 Eudicot View MSA
122049389 5273 Angiosperm View MSA
121351644 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain