Gene : Cagra.3517s0004 C. grandiflora v1.1
Defline:  (1 of 9) PTHR22835//PTHR22835:SF189 - ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Genomic Order:  4
Name:  ? Cagra.3517s0004 Secondary Identifier:  ? PAC:28916889
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-3301 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3517s0004 0.5kb upstream 0.5kb upstream 9129 true Scaffold3517: 15328-24456 Capsella grandiflora
Cagra.3517s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold3517: 23957-24456 Capsella grandiflora
Cagra.3517s0004 0.5kb downstream 0.5kb downstream 9129 true Scaffold3517: 14828-23956 Capsella grandiflora
Cagra.3517s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold3517: 14828-15327 Capsella grandiflora
Cagra.3517s0004 1.0kb upstream 1.0kb upstream 9629 true Scaffold3517: 15328-24956 Capsella grandiflora
Cagra.3517s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold3517: 23957-24956 Capsella grandiflora
Cagra.3517s0004 1.0kb downstream 1.0kb downstream 9629 true Scaffold3517: 14328-23956 Capsella grandiflora
Cagra.3517s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold3517: 14328-15327 Capsella grandiflora
Cagra.3517s0004 2.0kb upstream 2.0kb upstream 10629 true Scaffold3517: 15328-25956 Capsella grandiflora
Cagra.3517s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold3517: 23957-25956 Capsella grandiflora
Cagra.3517s0004 2.0kb downstream 2.0kb downstream 10629 true Scaffold3517: 13328-23956 Capsella grandiflora
Cagra.3517s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold3517: 13328-15327 Capsella grandiflora
Cagra.3517s0004 5.0kb upstream 5.0kb upstream 13629 true Scaffold3517: 15328-28956 Capsella grandiflora
Cagra.3517s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold3517: 23957-28956 Capsella grandiflora
Cagra.3517s0004 5.0kb downstream 5.0kb downstream 13629 true Scaffold3517: 10328-23956 Capsella grandiflora
Cagra.3517s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold3517: 10328-15327 Capsella grandiflora
Cagra.3517s0004 10.0kb upstream 10.0kb upstream 18629 true Scaffold3517: 15328-33956 Capsella grandiflora
Cagra.3517s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold3517: 23957-33956 Capsella grandiflora
Cagra.3517s0004 10.0kb downstream 10.0kb downstream 18629 true Scaffold3517: 5328-23956 Capsella grandiflora
Cagra.3517s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold3517: 5328-15327 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380400 5261 Brassicaceae View MSA
123837902 5264 Brassicales-Malvales View MSA
124322372 5266 SBM View MSA
124250443 5268 Malvidae View MSA
124073778 5270 Rosid View MSA
123753785 5271 Pentapetalae View MSA
122797352 5272 Eudicot View MSA
122051674 5273 Angiosperm View MSA
121351762 5274 Embryophyte View MSA
123428079 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain