Gene : Cagra.3514s0012 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11452:SF14 - ALPHA-GALACTOSIDASE A Genomic Order:  12
Name:  ? Cagra.3514s0012 Secondary Identifier:  ? PAC:28905993
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-1301 Capsella grandiflora pathologic  
Cgrandiflora PWY-6527 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3514s0012 0.5kb upstream 0.5kb upstream 4048 true Scaffold3514: 37202-41249 Capsella grandiflora
Cagra.3514s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold3514: 40750-41249 Capsella grandiflora
Cagra.3514s0012 0.5kb downstream 0.5kb downstream 4048 true Scaffold3514: 36702-40749 Capsella grandiflora
Cagra.3514s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold3514: 36702-37201 Capsella grandiflora
Cagra.3514s0012 1.0kb upstream 1.0kb upstream 4548 true Scaffold3514: 37202-41749 Capsella grandiflora
Cagra.3514s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold3514: 40750-41749 Capsella grandiflora
Cagra.3514s0012 1.0kb downstream 1.0kb downstream 4548 true Scaffold3514: 36202-40749 Capsella grandiflora
Cagra.3514s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold3514: 36202-37201 Capsella grandiflora
Cagra.3514s0012 2.0kb upstream 2.0kb upstream 5548 true Scaffold3514: 37202-42749 Capsella grandiflora
Cagra.3514s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold3514: 40750-42749 Capsella grandiflora
Cagra.3514s0012 2.0kb downstream 2.0kb downstream 5548 true Scaffold3514: 35202-40749 Capsella grandiflora
Cagra.3514s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold3514: 35202-37201 Capsella grandiflora
Cagra.3514s0012 5.0kb upstream 5.0kb upstream 8548 true Scaffold3514: 37202-45749 Capsella grandiflora
Cagra.3514s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold3514: 40750-45749 Capsella grandiflora
Cagra.3514s0012 5.0kb downstream 5.0kb downstream 8548 true Scaffold3514: 32202-40749 Capsella grandiflora
Cagra.3514s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold3514: 32202-37201 Capsella grandiflora
Cagra.3514s0012 10.0kb upstream 10.0kb upstream 13548 true Scaffold3514: 37202-50749 Capsella grandiflora
Cagra.3514s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold3514: 40750-50749 Capsella grandiflora
Cagra.3514s0012 10.0kb downstream 10.0kb downstream 13548 true Scaffold3514: 27202-40749 Capsella grandiflora
Cagra.3514s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold3514: 27202-37201 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364962 5261 Brassicaceae View MSA
123827886 5264 Brassicales-Malvales View MSA
124343227 5266 SBM View MSA
124238425 5268 Malvidae View MSA
124064341 5270 Rosid View MSA
123740921 5271 Pentapetalae View MSA
122794912 5272 Eudicot View MSA
122043993 5273 Angiosperm View MSA
121347299 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain