Gene : Cagra.3501s0042 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31388:SF37 - PEROXIDASE 4-RELATED Genomic Order:  42
Name:  ? Cagra.3501s0042 Secondary Identifier:  ? PAC:28902353
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  
Cgrandiflora PWY-7214 Capsella grandiflora pathologic  
Cgrandiflora PWY-7445 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3501s0042 0.5kb upstream 0.5kb upstream 1802 true Scaffold3501: 170973-172774 Capsella grandiflora
Cagra.3501s0042 0.5kb upstream 0.5kb upstream 500 false Scaffold3501: 170973-171472 Capsella grandiflora
Cagra.3501s0042 0.5kb downstream 0.5kb downstream 1802 true Scaffold3501: 171473-173274 Capsella grandiflora
Cagra.3501s0042 0.5kb downstream 0.5kb downstream 500 false Scaffold3501: 172775-173274 Capsella grandiflora
Cagra.3501s0042 1.0kb upstream 1.0kb upstream 2302 true Scaffold3501: 170473-172774 Capsella grandiflora
Cagra.3501s0042 1.0kb upstream 1.0kb upstream 1000 false Scaffold3501: 170473-171472 Capsella grandiflora
Cagra.3501s0042 1.0kb downstream 1.0kb downstream 2302 true Scaffold3501: 171473-173774 Capsella grandiflora
Cagra.3501s0042 1.0kb downstream 1.0kb downstream 1000 false Scaffold3501: 172775-173774 Capsella grandiflora
Cagra.3501s0042 2.0kb upstream 2.0kb upstream 3302 true Scaffold3501: 169473-172774 Capsella grandiflora
Cagra.3501s0042 2.0kb upstream 2.0kb upstream 2000 false Scaffold3501: 169473-171472 Capsella grandiflora
Cagra.3501s0042 2.0kb downstream 2.0kb downstream 3302 true Scaffold3501: 171473-174774 Capsella grandiflora
Cagra.3501s0042 2.0kb downstream 2.0kb downstream 2000 false Scaffold3501: 172775-174774 Capsella grandiflora
Cagra.3501s0042 5.0kb upstream 5.0kb upstream 6302 true Scaffold3501: 166473-172774 Capsella grandiflora
Cagra.3501s0042 5.0kb upstream 5.0kb upstream 5000 false Scaffold3501: 166473-171472 Capsella grandiflora
Cagra.3501s0042 5.0kb downstream 5.0kb downstream 6302 true Scaffold3501: 171473-177774 Capsella grandiflora
Cagra.3501s0042 5.0kb downstream 5.0kb downstream 5000 false Scaffold3501: 172775-177774 Capsella grandiflora
Cagra.3501s0042 10.0kb upstream 10.0kb upstream 11302 true Scaffold3501: 161473-172774 Capsella grandiflora
Cagra.3501s0042 10.0kb upstream 10.0kb upstream 10000 false Scaffold3501: 161473-171472 Capsella grandiflora
Cagra.3501s0042 10.0kb downstream 10.0kb downstream 11302 true Scaffold3501: 171473-182774 Capsella grandiflora
Cagra.3501s0042 10.0kb downstream 10.0kb downstream 10000 false Scaffold3501: 172775-182774 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378530 5261 Brassicaceae View MSA
123836938 5264 Brassicales-Malvales View MSA
124322227 5266 SBM View MSA
124249111 5268 Malvidae View MSA
124068770 5270 Rosid View MSA
123752607 5271 Pentapetalae View MSA
122796741 5272 Eudicot View MSA
122051577 5273 Angiosperm View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain