Gene : Cagra.3467s0002 C. grandiflora v1.1
Defline:  (1 of 1) PTHR21266:SF25 - PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT 52, CHLOROPLASTIC Genomic Order:  2
Name:  ? Cagra.3467s0002 Secondary Identifier:  ? PAC:28912086
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5098 Capsella grandiflora pathologic  
Cgrandiflora PWY-6927 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.3467s0002 0.5kb upstream 0.5kb upstream 2412 true Scaffold3467: 5623-8034 Capsella grandiflora
Cagra.3467s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold3467: 7535-8034 Capsella grandiflora
Cagra.3467s0002 0.5kb downstream 0.5kb downstream 2412 true Scaffold3467: 5123-7534 Capsella grandiflora
Cagra.3467s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold3467: 5123-5622 Capsella grandiflora
Cagra.3467s0002 1.0kb upstream 1.0kb upstream 2912 true Scaffold3467: 5623-8534 Capsella grandiflora
Cagra.3467s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold3467: 7535-8534 Capsella grandiflora
Cagra.3467s0002 1.0kb downstream 1.0kb downstream 2912 true Scaffold3467: 4623-7534 Capsella grandiflora
Cagra.3467s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold3467: 4623-5622 Capsella grandiflora
Cagra.3467s0002 2.0kb upstream 2.0kb upstream 3912 true Scaffold3467: 5623-9534 Capsella grandiflora
Cagra.3467s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold3467: 7535-9534 Capsella grandiflora
Cagra.3467s0002 2.0kb downstream 2.0kb downstream 3912 true Scaffold3467: 3623-7534 Capsella grandiflora
Cagra.3467s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold3467: 3623-5622 Capsella grandiflora
Cagra.3467s0002 5.0kb upstream 5.0kb upstream 6912 true Scaffold3467: 5623-12534 Capsella grandiflora
Cagra.3467s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold3467: 7535-12534 Capsella grandiflora
Cagra.3467s0002 5.0kb downstream 5.0kb downstream 6912 true Scaffold3467: 623-7534 Capsella grandiflora
Cagra.3467s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold3467: 623-5622 Capsella grandiflora
Cagra.3467s0002 10.0kb upstream 10.0kb upstream 11912 true Scaffold3467: 5623-17534 Capsella grandiflora
Cagra.3467s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold3467: 7535-17534 Capsella grandiflora
Cagra.3467s0002 10.0kb downstream 10.0kb downstream 7534 true Scaffold3467: 1-7534 Capsella grandiflora
Cagra.3467s0002 10.0kb downstream 10.0kb downstream 5622 false Scaffold3467: 1-5622 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370768 5261 Brassicaceae View MSA
123828575 5264 Brassicales-Malvales View MSA
124336609 5266 SBM View MSA
124240236 5268 Malvidae View MSA
124064980 5270 Rosid View MSA
123746425 5271 Pentapetalae View MSA
122797838 5272 Eudicot View MSA
122045189 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121347962 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain