Gene : Cagra.4118s0002 C. grandiflora v1.1
Defline:  (1 of 91) 3.1.1.11 - Pectinesterase / Pectin methylesterase Genomic Order:  2
Name:  ? Cagra.4118s0002 Secondary Identifier:  ? PAC:28898612
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1081 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4118s0002 0.5kb upstream 0.5kb upstream 2514 true Scaffold4118: 6162-8675 Capsella grandiflora
Cagra.4118s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold4118: 6162-6661 Capsella grandiflora
Cagra.4118s0002 0.5kb downstream 0.5kb downstream 2514 true Scaffold4118: 6662-9175 Capsella grandiflora
Cagra.4118s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold4118: 8676-9175 Capsella grandiflora
Cagra.4118s0002 1.0kb upstream 1.0kb upstream 3014 true Scaffold4118: 5662-8675 Capsella grandiflora
Cagra.4118s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold4118: 5662-6661 Capsella grandiflora
Cagra.4118s0002 1.0kb downstream 1.0kb downstream 3014 true Scaffold4118: 6662-9675 Capsella grandiflora
Cagra.4118s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold4118: 8676-9675 Capsella grandiflora
Cagra.4118s0002 2.0kb upstream 2.0kb upstream 4014 true Scaffold4118: 4662-8675 Capsella grandiflora
Cagra.4118s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold4118: 4662-6661 Capsella grandiflora
Cagra.4118s0002 2.0kb downstream 2.0kb downstream 4014 true Scaffold4118: 6662-10675 Capsella grandiflora
Cagra.4118s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold4118: 8676-10675 Capsella grandiflora
Cagra.4118s0002 5.0kb upstream 5.0kb upstream 7014 true Scaffold4118: 1662-8675 Capsella grandiflora
Cagra.4118s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold4118: 1662-6661 Capsella grandiflora
Cagra.4118s0002 5.0kb downstream 5.0kb downstream 7014 true Scaffold4118: 6662-13675 Capsella grandiflora
Cagra.4118s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold4118: 8676-13675 Capsella grandiflora
Cagra.4118s0002 10.0kb upstream 10.0kb upstream 8675 true Scaffold4118: 1-8675 Capsella grandiflora
Cagra.4118s0002 10.0kb upstream 10.0kb upstream 6661 false Scaffold4118: 1-6661 Capsella grandiflora
Cagra.4118s0002 10.0kb downstream 10.0kb downstream 12014 true Scaffold4118: 6662-18675 Capsella grandiflora
Cagra.4118s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold4118: 8676-18675 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381761 5261 Brassicaceae View MSA
123837019 5264 Brassicales-Malvales View MSA
124347983 5266 SBM View MSA
124248837 5268 Malvidae View MSA
124064773 5270 Rosid View MSA
123747897 5271 Pentapetalae View MSA
122796523 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain