Gene : Cagra.4085s0004 C. grandiflora v1.1
Defline:  (1 of 2) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  4
Name:  ? Cagra.4085s0004 Secondary Identifier:  ? PAC:28895235
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRIGLSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4085s0004 0.5kb upstream 0.5kb upstream 4937 true Scaffold4085: 12940-17876 Capsella grandiflora
Cagra.4085s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold4085: 12940-13439 Capsella grandiflora
Cagra.4085s0004 0.5kb downstream 0.5kb downstream 4937 true Scaffold4085: 13440-18376 Capsella grandiflora
Cagra.4085s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold4085: 17877-18376 Capsella grandiflora
Cagra.4085s0004 1.0kb upstream 1.0kb upstream 5437 true Scaffold4085: 12440-17876 Capsella grandiflora
Cagra.4085s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold4085: 12440-13439 Capsella grandiflora
Cagra.4085s0004 1.0kb downstream 1.0kb downstream 5437 true Scaffold4085: 13440-18876 Capsella grandiflora
Cagra.4085s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold4085: 17877-18876 Capsella grandiflora
Cagra.4085s0004 2.0kb upstream 2.0kb upstream 6437 true Scaffold4085: 11440-17876 Capsella grandiflora
Cagra.4085s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold4085: 11440-13439 Capsella grandiflora
Cagra.4085s0004 2.0kb downstream 2.0kb downstream 6437 true Scaffold4085: 13440-19876 Capsella grandiflora
Cagra.4085s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold4085: 17877-19876 Capsella grandiflora
Cagra.4085s0004 5.0kb upstream 5.0kb upstream 9437 true Scaffold4085: 8440-17876 Capsella grandiflora
Cagra.4085s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold4085: 8440-13439 Capsella grandiflora
Cagra.4085s0004 5.0kb downstream 5.0kb downstream 9437 true Scaffold4085: 13440-22876 Capsella grandiflora
Cagra.4085s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold4085: 17877-22876 Capsella grandiflora
Cagra.4085s0004 10.0kb upstream 10.0kb upstream 14437 true Scaffold4085: 3440-17876 Capsella grandiflora
Cagra.4085s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold4085: 3440-13439 Capsella grandiflora
Cagra.4085s0004 10.0kb downstream 10.0kb downstream 14437 true Scaffold4085: 13440-27876 Capsella grandiflora
Cagra.4085s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold4085: 17877-27876 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375198 5261 Brassicaceae View MSA
123837435 5264 Brassicales-Malvales View MSA
124338514 5266 SBM View MSA
124253229 5268 Malvidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain