Gene : Cagra.4085s0001 C. grandiflora v1.1
Defline:  (1 of 2) PTHR33676:SF3 - COLD REGULATED PROTEIN 27 Genomic Order:  1
Name:  ? Cagra.4085s0001 Secondary Identifier:  ? PAC:28895239
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4085s0001 0.5kb upstream 0.5kb upstream 1893 true Scaffold4085: 949-2841 Capsella grandiflora
Cagra.4085s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold4085: 949-1448 Capsella grandiflora
Cagra.4085s0001 0.5kb downstream 0.5kb downstream 1893 true Scaffold4085: 1449-3341 Capsella grandiflora
Cagra.4085s0001 0.5kb downstream 0.5kb downstream 500 false Scaffold4085: 2842-3341 Capsella grandiflora
Cagra.4085s0001 1.0kb upstream 1.0kb upstream 2393 true Scaffold4085: 449-2841 Capsella grandiflora
Cagra.4085s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold4085: 449-1448 Capsella grandiflora
Cagra.4085s0001 1.0kb downstream 1.0kb downstream 2393 true Scaffold4085: 1449-3841 Capsella grandiflora
Cagra.4085s0001 1.0kb downstream 1.0kb downstream 1000 false Scaffold4085: 2842-3841 Capsella grandiflora
Cagra.4085s0001 2.0kb upstream 2.0kb upstream 2841 true Scaffold4085: 1-2841 Capsella grandiflora
Cagra.4085s0001 2.0kb upstream 2.0kb upstream 1448 false Scaffold4085: 1-1448 Capsella grandiflora
Cagra.4085s0001 2.0kb downstream 2.0kb downstream 3393 true Scaffold4085: 1449-4841 Capsella grandiflora
Cagra.4085s0001 2.0kb downstream 2.0kb downstream 2000 false Scaffold4085: 2842-4841 Capsella grandiflora
Cagra.4085s0001 5.0kb upstream 5.0kb upstream 2841 true Scaffold4085: 1-2841 Capsella grandiflora
Cagra.4085s0001 5.0kb upstream 5.0kb upstream 1448 false Scaffold4085: 1-1448 Capsella grandiflora
Cagra.4085s0001 5.0kb downstream 5.0kb downstream 6393 true Scaffold4085: 1449-7841 Capsella grandiflora
Cagra.4085s0001 5.0kb downstream 5.0kb downstream 5000 false Scaffold4085: 2842-7841 Capsella grandiflora
Cagra.4085s0001 10.0kb upstream 10.0kb upstream 2841 true Scaffold4085: 1-2841 Capsella grandiflora
Cagra.4085s0001 10.0kb upstream 10.0kb upstream 1448 false Scaffold4085: 1-1448 Capsella grandiflora
Cagra.4085s0001 10.0kb downstream 10.0kb downstream 11393 true Scaffold4085: 1449-12841 Capsella grandiflora
Cagra.4085s0001 10.0kb downstream 10.0kb downstream 10000 false Scaffold4085: 2842-12841 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367604 5261 Brassicaceae View MSA
123831843 5264 Brassicales-Malvales View MSA
124348422 5266 SBM View MSA
124247842 5268 Malvidae View MSA
124071591 5270 Rosid View MSA
123751833 5271 Pentapetalae View MSA
122791785 5272 Eudicot View MSA
122049905 5273 Angiosperm View MSA
121311643 5274 Embryophyte View MSA
123348914 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain