Gene : Cagra.4085s0006 C. grandiflora v1.1
Defline:  (1 of 57) PF02458 - Transferase family (Transferase) Genomic Order:  6
Name:  ? Cagra.4085s0006 Secondary Identifier:  ? PAC:28895241
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-361 Capsella grandiflora pathologic  
Cgrandiflora PWY-6039 Capsella grandiflora pathologic  
Cgrandiflora PWY-6040 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.4085s0006 0.5kb upstream 0.5kb upstream 2348 true Scaffold4085: 31444-33791 Capsella grandiflora
Cagra.4085s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold4085: 33292-33791 Capsella grandiflora
Cagra.4085s0006 0.5kb downstream 0.5kb downstream 2348 true Scaffold4085: 30944-33291 Capsella grandiflora
Cagra.4085s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold4085: 30944-31443 Capsella grandiflora
Cagra.4085s0006 1.0kb upstream 1.0kb upstream 2420 true Scaffold4085: 31444-33863 Capsella grandiflora
Cagra.4085s0006 1.0kb upstream 1.0kb upstream 572 false Scaffold4085: 33292-33863 Capsella grandiflora
Cagra.4085s0006 1.0kb downstream 1.0kb downstream 2848 true Scaffold4085: 30444-33291 Capsella grandiflora
Cagra.4085s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold4085: 30444-31443 Capsella grandiflora
Cagra.4085s0006 2.0kb upstream 2.0kb upstream 2420 true Scaffold4085: 31444-33863 Capsella grandiflora
Cagra.4085s0006 2.0kb upstream 2.0kb upstream 572 false Scaffold4085: 33292-33863 Capsella grandiflora
Cagra.4085s0006 2.0kb downstream 2.0kb downstream 3848 true Scaffold4085: 29444-33291 Capsella grandiflora
Cagra.4085s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold4085: 29444-31443 Capsella grandiflora
Cagra.4085s0006 5.0kb upstream 5.0kb upstream 2420 true Scaffold4085: 31444-33863 Capsella grandiflora
Cagra.4085s0006 5.0kb upstream 5.0kb upstream 572 false Scaffold4085: 33292-33863 Capsella grandiflora
Cagra.4085s0006 5.0kb downstream 5.0kb downstream 6848 true Scaffold4085: 26444-33291 Capsella grandiflora
Cagra.4085s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold4085: 26444-31443 Capsella grandiflora
Cagra.4085s0006 10.0kb upstream 10.0kb upstream 2420 true Scaffold4085: 31444-33863 Capsella grandiflora
Cagra.4085s0006 10.0kb upstream 10.0kb upstream 572 false Scaffold4085: 33292-33863 Capsella grandiflora
Cagra.4085s0006 10.0kb downstream 10.0kb downstream 11848 true Scaffold4085: 21444-33291 Capsella grandiflora
Cagra.4085s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold4085: 21444-31443 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364120 5261 Brassicaceae View MSA
123837047 5264 Brassicales-Malvales View MSA
124344144 5266 SBM View MSA
124238828 5268 Malvidae View MSA
124068484 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain